STRING 7 - recent developments in the integration and prediction of protein interactions. - Christian von Mering; Lars Juhl Jensen; Michael Kuhn 004; Samuel Chaffron; Tobias Doerks; Beate Krüger; Berend Snel; Peer Bork (Nucleic Acids Res., 2007)

SuperTarget and Matador: resources for exploring drug-target relationships. - Stefan Günther; Michael Kuhn 004; Mathias Dunkel; Monica Campillos; Christian Senger; Evangelia Petsalaki; Jessica Ahmed; Eduardo Garcia Urdiales; Andreas Gewiess; Lars Juhl Jensen; Reinhard Schneider 002; Roman Skoblo; et al. (Nucleic Acids Res., 2008)

eggNOG: automated construction and annotation of orthologous groups of genes. - Lars Juhl Jensen; Philippe Julien; Michael Kuhn 004; Christian von Mering; Jean Muller; Tobias Doerks; Peer Bork (Nucleic Acids Res., 2008)

STITCH: interaction networks of chemicals and proteins. - Michael Kuhn 004; Christian von Mering; Monica Campillos; Lars Juhl Jensen; Peer Bork (Nucleic Acids Res., 2008)

OnTheFly: a tool for automated document-based text annotation, data linking and network generation. - Georgios A. Pavlopoulos; Evangelos Pafilis; Michael Kuhn 004; Sean D. Hooper; Reinhard Schneider 002 (Bioinform., 2009)

STRING 8 - a global view on proteins and their functional interactions in 630 organisms. - Lars Juhl Jensen; Michael Kuhn 004; Manuel Stark; Samuel Chaffron; Christopher J. Creevey; Jean Muller; Tobias Doerks; Philippe Julien; Alexander Roth 001; Milan Simonovic; Peer Bork; Christian von Mering (Nucleic Acids Res., 2009)

Microblogging the ISMB: A New Approach to Conference Reporting. - Neil F. W. Saunders; Pedro Beltrão; Lars Juhl Jensen; Daniel Jurczak; Roland Krause; Michael Kuhn 004; Shirley Wu (PLoS Comput. Biol., 2009)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. - Toshiaki Katayama; Kazuharu Arakawa; Mitsuteru Nakao; Keiichiro Ono; Kiyoko F. Aoki-Kinoshita; Yasunori Yamamoto; Atsuko Yamaguchi; Shuichi Kawashima; Hong-Woo Chun; Jan Aerts; Bruno Aranda; Lord H. Barboza; et al. (J. Biomed. Semant., 2010)

STITCH 2: an interaction network database for small molecules and proteins. - Michael Kuhn 004; Damian Szklarczyk; Andrea Franceschini; Monica Campillos; Christian von Mering; Lars Juhl Jensen; Andreas Beyer; Peer Bork (Nucleic Acids Res., 2010)

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. - Jean Muller; Damian Szklarczyk; Philippe Julien; Ivica Letunic; Alexander Roth 001; Michael Kuhn 004; Sean Powell; Christian von Mering; Tobias Doerks; Lars Juhl Jensen; Peer Bork (Nucleic Acids Res., 2010)

Drug-Induced Regulation of Target Expression. - Murat Iskar; Monica Campillos; Michael Kuhn 004; Lars Juhl Jensen; Vera van Noort; Peer Bork (PLoS Comput. Biol., 2010)

Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009. - Allyson L. Lister; Ruchira S. Datta; Oliver Hofmann 001; Roland Krause; Michael Kuhn 004; Bettina Roth; Reinhard Schneider 002 (PLoS Comput. Biol., 2010)

Live Coverage of Scientific Conferences Using Web Technologies. - Allyson L. Lister; Ruchira S. Datta; Oliver Hofmann 001; Roland Krause; Michael Kuhn 004; Bettina Roth; Reinhard Schneider 002 (PLoS Comput. Biol., 2010)

Reflect: A practical approach to web semantics. - Seán I. O'Donoghue; Heiko Horn; Evangelos Pafilis; Sven Haag; Michael Kuhn 004; Venkata P. Satagopam; Reinhard Schneider 002; Lars Juhl Jensen (J. Web Semant., 2010)

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. - Damian Szklarczyk; Andrea Franceschini; Michael Kuhn 004; Milan Simonovic; Alexander Roth 001; Pablo Minguez; Tobias Doerks; Manuel Stark; Jean Muller; Peer Bork; Lars Juhl Jensen; Christian von Mering (Nucleic Acids Res., 2011)

Prediction of Drug Combinations by Integrating Molecular and Pharmacological Data. - Xing-Ming Zhao; Murat Iskar; Georg Zeller; Michael Kuhn 004; Vera van Noort; Peer Bork (PLoS Comput. Biol., 2011)

STITCH 3: zooming in on protein-chemical interactions. - Michael Kuhn 004; Damian Szklarczyk; Andrea Franceschini; Christian von Mering; Lars Juhl Jensen; Peer Bork (Nucleic Acids Res., 2012)

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. - Sean Powell; Damian Szklarczyk; Kalliopi Trachana; Alexander Roth 001; Michael Kuhn 004; Jean Muller; Roland Arnold; Thomas Rattei; Ivica Letunic; Tobias Doerks; Lars Juhl Jensen; Christian von Mering; et al. (Nucleic Acids Res., 2012)

STRING v9.1: protein-protein interaction networks, with increased coverage and integration. - Andrea Franceschini; Damian Szklarczyk; Sune Frankild; Michael Kuhn 004; Milan Simonovic; Alexander Roth 001; Jianyi Lin; Pablo Minguez; Peer Bork; Christian von Mering; Lars Juhl Jensen (Nucleic Acids Res., 2013)

STITCH 4: integration of protein-chemical interactions with user data. - Michael Kuhn 004; Damian Szklarczyk; Sune Pletscher-Frankild; Thomas H. Blicher; Christian von Mering; Lars Juhl Jensen; Peer Bork (Nucleic Acids Res., 2014)

eggNOG v4.0: nested orthology inference across 3686 organisms. - Sean Powell; Kristoffer Forslund; Damian Szklarczyk; Kalliopi Trachana; Alexander Roth 001; Jaime Huerta-Cepas; Toni Gabaldón; Thomas Rattei; Christopher J. Creevey; Michael Kuhn 004; Lars Juhl Jensen; Christian von Mering; et al. (Nucleic Acids Res., 2014)

Coiled-Coil Proteins Facilitated the Functional Expansion of the Centrosome. - Michael Kuhn 004; Anthony A. Hyman; Andreas Beyer (PLoS Comput. Biol., 2014)

STRING v10: protein-protein interaction networks, integrated over the tree of life. - Damian Szklarczyk; Andrea Franceschini; Stefan Wyder; Kristoffer Forslund; Davide Heller; Jaime Huerta-Cepas; Milan Simonovic; Alexander Roth 001; Alberto Santos; Kalliopi Tsafou; Michael Kuhn 004; Peer Bork; et al. (Nucleic Acids Res., 2015)

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. - Jaime Huerta-Cepas; Damian Szklarczyk; Kristoffer Forslund; Helen Cook; Davide Heller; Mathias C. Walter; Thomas Rattei; Daniel R. Mende; Shinichi Sunagawa; Michael Kuhn 004; Lars Juhl Jensen; Christian von Mering; et al. (Nucleic Acids Res., 2016)

The SIDER database of drugs and side effects. - Michael Kuhn 004; Ivica Letunic; Lars Juhl Jensen; Peer Bork (Nucleic Acids Res., 2016)

STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. - Damian Szklarczyk; Alberto Santos; Christian von Mering; Lars Juhl Jensen; Peer Bork; Michael Kuhn 004 (Nucleic Acids Res., 2016)

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. - Damian Szklarczyk; John H. Morris; Helen Cook; Michael Kuhn 004; Stefan Wyder; Milan Simonovic; Alberto Santos; Nadezhda T. Doncheva; Alexander Roth 001; Peer Bork; Lars Juhl Jensen; Christian von Mering (Nucleic Acids Res., 2017)

The UCSC Genome Browser database: 2017 update. - Cath Tyner; Galt P. Barber; Jonathan Casper; Hiram Clawson; Mark Diekhans; Christopher Eisenhart; Clayton M. Fischer; David Gibson; Jairo Navarro Gonzalez; Luvina Guruvadoo; Maximilian Haeussler; Steven G. Heitner; et al. (Nucleic Acids Res., 2017)

Extensive impact of non-antibiotic drugs on human gut bacteria. - Lisa Maier; Mihaela Pruteanu; Michael Kuhn 004; Georg Zeller; Anja Telzerow; Exene Erin Anderson; Ana Rita Brochado; Keith Conrad Fernandez; Hitomi Dose; Hirotada Mori; Kiran Raosaheb Patil; Peer Bork; et al. (Nat., 2018)

Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features. - Yuanyue Li; Michael Kuhn 004; Anne-Claude Gavin; Peer Bork (Bioinform., 2020)

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. - Anthony Fullam; Ivica Letunic; Thomas S. B. Schmidt; Quinten R. Ducarmon; Nicolai Karcher; Supriya Khedkar; Michael Kuhn 004; Martin Larralde; Oleksandr M. Maistrenko; Lukas Malfertheiner; Alessio Milanese; João F. Matias Rodrigues; et al. (Nucleic Acids Res., 2023)