Nonlinear filters in genomic control. - Edward R. Dougherty; Michael L. Bittner; Yidong Chen 002; Seungchan Kim; Krishnamoorthy Sivakumar; Junior Barrera; Paul S. Meltzer; Jeffrey M. Trent (NSIP, 1999)

Ratio statistics of gene expression levels and applications to microarray data analysis. - Yidong Chen 002; Vishnu G. Kamat; Edward R. Dougherty; Michael L. Bittner; Paul S. Meltzer; Jeffrey M. Trent (Bioinform., 2002)

Assessing the significance of consistently mis-regulated genes in cancer associated gene expression matrices. - Mattias Wahde; Gregory T. Klus; Michael L. Bittner; Yidong Chen 002; Zoltan Szallasi (Bioinform., 2002)

Inference from Clustering with Application to Gene-Expression Microarrays. - Edward R. Dougherty; Junior Barrera; Marcel Brun; Seungchan Kim; Roberto Marcondes Cesar Junior; Yidong Chen 002; Michael L. Bittner; Jeffrey M. Trent (J. Comput. Biol., 2002)

Strong Feature Sets from Small Samples. - Seungchan Kim; Edward R. Dougherty; Junior Barrera; Yidong Chen 002; Michael L. Bittner; Jeffrey M. Trent (J. Comput. Biol., 2002)

Application of dynamic programming in genetic regulatory networks. - Aniruddha Datta; Ashish Choudhary; Michael L. Bittner; Edward R. Dougherty (CDC, 2003)

External Control in Markovian Genetic Regulatory Networks. - Aniruddha Datta; Ashish Choudhary; Michael L. Bittner; Edward R. Dougherty (Mach. Learn., 2003)

Efficient selection of feature sets possessing high coefficients of determination based on incremental determinations. - Ronaldo Fumio Hashimoto; Edward R. Dougherty; Marcel Brun; Zheng-Zheng Zhou; Michael L. Bittner; Jeffrey M. Trent (Signal Process., 2003)

Which is better for cDNA-microarray-based classification: ratios or direct intensities. - Sanju Attoor; Edward R. Dougherty; Yidong Chen 002; Michael L. Bittner; Jeffrey M. Trent (Bioinform., 2004)

External control in Markovian genetic regulatory networks: the imperfect information case. - Aniruddha Datta; Ashish Choudhary; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2004)

Growing genetic regulatory networks from seed genes. - Ronaldo Fumio Hashimoto; Seungchan Kim; Ilya Shmulevich; Wei Zhang 011; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2004)

A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks. - Xiaobo Zhou 001; Xiaodong Wang 001; Ranadip Pal; Ivan Ivanov 001; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2004)

Genomic Signal Processing: The Salient Issues. - Edward R. Dougherty; Ilya Shmulevich; Michael L. Bittner (EURASIP J. Adv. Signal Process., 2004)

Assignment of terminal penalties in controlling genetic regulatory networks. - Ashish Choudhary; Aniruddha Datta; Michael L. Bittner; Edward R. Dougherty (ACC, 2005)

External control in a special class of probabilistic Boolean networks. - Ranadip Pal; Aniruddha Datta; Michael L. Bittner; Edward R. Dougherty (ACC, 2005)

BioLog: A Browser Based Collaboration and Resource Navigation Assistant for BioMedical Researchers. - Prabhdeep Singh; R. Bhimavarapu; Hasan Davulcu; Chitta Baral; Seungchan Kim; Huan Liu 001; Michael L. Bittner; I. V. Ramakrishnan (DILS, 2005)

Intervention in context-sensitive probabilistic Boolean networks. - Ranadip Pal; Aniruddha Datta; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2005)

Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS. - Ranadip Pal; Aniruddha Datta; Albert J. Fornace Jr.; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2005)

Generating Boolean networks with a prescribed attractor structure. - Ranadip Pal; Ivan Ivanov 001; Aniruddha Datta; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2005)

Optimal Control in a Family of Boolean Networks. - Ashish Choudhary; Aniruddha Datta; Michael L. Bittner; Edward R. Dougherty (CDC, 2006)

Intervention in a family of Boolean networks. - Ashish Choudhary; Aniruddha Datta; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2006)

Normalization Benefits Microarray-Based Classification. - Jianping Hua; Yoganand Balagurunathan; Yidong Chen 002; James Lowey; Michael L. Bittner; Zixiang Xiong; Edward Suh; Edward R. Dougherty (EURASIP J. Bioinform. Syst. Biol., 2006)

A structural PGN model for control of cell-cycle Progression. - Nestor Walter Trepode; Hugo Aguirre Armelin; Michael L. Bittner; Junior Barrera; Marco Dimas Gubitoso; Ronaldo Fumio Hashimoto (ISMM (2), 2007)

A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks. - Nestor Walter Trepode; Hugo Aguirre Armelin; Michael L. Bittner; Junior Barrera; Marco Dimas Gubitoso; Ronaldo Fumio Hashimoto (EURASIP J. Bioinform. Syst. Biol., 2007)

Intrinsically Multivariate Predictive Genes. - David Correa Martins Jr.; Ulisses M. Braga-Neto; Ronaldo Fumio Hashimoto; Michael L. Bittner; Edward R. Dougherty (IEEE J. Sel. Top. Signal Process., 2008)

Context-Specific Gene Regulations in Cancer Gene Expression Data. - Ina Sen; Michael P. Verdicchio; Sungwon Jung; Robert P. Trevino; Michael L. Bittner (Pacific Symposium on Biocomputing, 2009)

The effect of microarray image compression on expression-based classification. - Qian Xu 001; Jianping Hua; Zixiang Xiong; Michael L. Bittner; Edward R. Dougherty (Signal Image Video Process., 2009)

Conditioning-Based Modeling of Contextual Genomic Regulation. - Edward R. Dougherty; Marcel Brun; Jeffrey M. Trent; Michael L. Bittner (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Small-sample precision of ROC-related estimates. - Blaise Hanczar; Jianping Hua; Chao Sima; John N. Weinstein; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2010)

Stationary and structural control in gene regulatory networks: basic concepts. - Edward R. Dougherty; Ranadip Pal; Xiaoning Qian; Michael L. Bittner; Aniruddha Datta (Int. J. Syst. Sci., 2010)

Combination therapy design for cancer: A digital systems approach. - Ritwik Layek; Aniruddha Datta; Michael L. Bittner; Edward R. Dougherty (CDC/ECC, 2011)

Assessing the efficacy of molecularly targeted agents by using Kalman filter. - Xiangfang Li; Lijun Qian; Michael L. Bittner; Edward R. Dougherty (GENSiPS, 2011)

Pathway analysis in the context of Bayesian networks - mathematical modeling of master and canalizing genes. - Chen Zhao; Ivan Ivanov 001; Michael L. Bittner; Edward R. Dougherty (GENSiPS, 2011)

Cancer therapy design based on pathway logic. - Ritwik Layek; Aniruddha Datta; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2011)

Characterization of Drug Efficacy Regions Based on Dosage and Frequency Schedules. - Xiangfang Li; Lijun Qian; Michael L. Bittner; Edward R. Dougherty (IEEE Trans. Biomed. Eng., 2011)

Identifying mechanistic similarities in drug responses. - Chen Zhao; Jianping Hua; Michael L. Bittner; Ivan Ivanov 001; Edward R. Dougherty (Bioinform., 2012)

Drug effect study on proliferation and survival pathways on cell line-based platform: A stochastic hybrid systems approach. - Xiangfang Li; Lijun Qian; Michael L. Bittner; Edward R. Dougherty (GENSiPS, 2013)

Dynamical modeling of uncertain interaction-based genomic networks. - Daniel N. Mohsenizadeh; Jianping Hua; Michael L. Bittner; Edward R. Dougherty (BMC Bioinform., 2015)

Detecting Cell Growth and Drug Response in Heterogeneous Populations: A Dynamic Imaging Approach. - Chao Sima; Jianping Hua; Rosana Lopes; Aniruddha Datta; Michael L. Bittner (BIBE, 2016)

A Bayesian approach to determine the composition of heterogeneous cancer tissue. - Ashish Katiyar; Anwoy Kumar Mohanty; Jianping Hua; Chao Sima; Rosana Lopes; Aniruddha Datta; Michael L. Bittner (BMC Bioinform., 2018)

Bayesian Inference Identifies Combination Therapeutic Targets in Breast Cancer. - Haswanth Vundavilli; Aniruddha Datta; Chao Sima; Jianping Hua; Rosana Lopes; Michael L. Bittner (IEEE Trans. Biomed. Eng., 2019)

A Gaussian Mixture-Model Exploiting Pathway Knowledge for Dissecting Cancer Heterogeneity. - Rajan Kapoor; Aniruddha Datta; Chao Sima; Jianping Hua; Rosana Lopes; Michael L. Bittner (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

In Silico Design and Experimental Validation of Combination Therapy for Pancreatic Cancer. - Haswanth Vundavilli; Aniruddha Datta; Chao Sima; Jianping Hua; Rosana Lopes; Michael L. Bittner (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Cryptotanshinone Induces Cell Death in Lung Cancer by Targeting Aberrant Feedback Loops. - Haswanth Vundavilli; Aniruddha Datta; Chao Sima; Jainping Hua; Rosana Lopes; Michael L. Bittner (IEEE J. Biomed. Health Informatics, 2020)

In Silico Modeling of the Induction of Apoptosis by Cryptotanshinone in Osteosarcoma Cell Lines. - Radhika Saraf; Aniruddha Datta; Chao Sima; Jianping Hua; Rosana Lopes; Michael L. Bittner; Tasha Miller; Heather M. Wilson-Robles (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)