Time-Point Specific Weighting Improves Coexpression Networks from Time-Course Experiments. - Jie Tan; Gavin D. Grant; Michael L. Whitfield; Casey S. Greene (EvoBIO, 2013)

Transcription Factor Binding Profiles Reveal Cyclic Expression of Human Protein-coding Genes and Non-coding RNAs. - Chao Cheng; Matthew Ung; Gavin D. Grant; Michael L. Whitfield (PLoS Comput. Biol., 2013)

Systems Level Analysis of Systemic Sclerosis Shows a Network of Immune and Profibrotic Pathways Connected with Genetic Polymorphisms. - J. Matthew Mahoney; Jaclyn N. Taroni; Viktor Martyanov; Tammara A. Wood; Casey S. Greene; Patricia A. Pioli; Monique E. Hinchcliff; Michael L. Whitfield (PLoS Comput. Biol., 2015)

Feature specific quantile normalization enables cross-platform classification of molecular subtypes using gene expression data. - Jennifer M. Franks; Guoshuai Cai; Michael L. Whitfield (Bioinform., 2018)

BioMethyl: an R package for biological interpretation of DNA methylation data. - Yue Wang; Jennifer M. Franks; Michael L. Whitfield; Chao Cheng (Bioinform., 2019)