BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. - Takayoshi Shoudai; Michael Lappe; Satoru Miyano; Ayumi Shinohara; Takeo Okazaki; Setsuo Arikawa; Tomoyuki Uchida; Shinichi Shimozono; Takeshi Shinohara; Satoru Kuhara (ISMB, 1995)

Generating protein interaction maps from incomplete data: application to fold assignment. - Michael Lappe; Jong-Chan Park; Oliver Niggemann; Liisa Holm (ISMB (Supplement of Bioinformatics), 2001)

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3. - Sabine Dietmann; Jong-Chan Park; Cédric Notredame; Andreas Heger; Michael Lappe; Liisa Holm (Nucleic Acids Res., 2001)

Accurate Detection of Very Sparse Sequence Motifs. - Andreas Heger; Michael Lappe; Liisa Holm (J. Comput. Biol., 2004)

PSIbase: a database of Protein Structural Interactome map (PSIMAP). - Sungsam Gong; Giseok Yoon; Insoo Jang; Dan M. Bolser; Panos Dafas; Michael Schroeder 001; Hansol Choi; Yoobok Cho; Kyungsook Han; Sunghoon Lee; Hwanho Choi; Michael Lappe; et al. (Bioinform., 2005)

Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). - Daeui Park; Semin Lee; Dan M. Bolser; Michael Schroeder 001; Michael Lappe; Donghoon Oh; Jong Bhak (Bioinform., 2005)

Prediction of viable circular permutants using a graph theoretic approach. - Konrad H. Paszkiewicz; Michael J. E. Sternberg; Michael Lappe (Bioinform., 2006)

Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem. - Brijnesh J. Jain; Michael Lappe (BIRD, 2007)

Detection of protein catalytic residues at high precision using local network properties. - Patrick Slama; Ioannis Filippis; Michael Lappe (BMC Bioinform., 2008)

Multiple alignment of contact maps. - Brijnesh J. Jain; Brijnesh Stehr; Michael Lappe; Klaus Obermayer (IJCNN, 2009)

Defining an Essence of Structure Determining Residue Contacts in Proteins. - Rajagopal Sathyapriya; Jose M. Duarte; Henning Stehr; Ioannis Filippis; Michael Lappe (PLoS Comput. Biol., 2009)

PDBWiki: added value through community annotation of the Protein Data Bank. - Henning Stehr; Jose M. Duarte; Michael Lappe; Jong Bhak; Dan M. Bolser (Database J. Biol. Databases Curation, 2010)

Optimal contact definition for reconstruction of Contact Maps. - Jose M. Duarte; Rajagopal Sathyapriya; Henning Stehr; Ioannis Filippis; Michael Lappe (BMC Bioinform., 2010)

Visualization of anisotropic contact potentials within protein structures. - Corinna Vehlow; Bernhard Preim; Michael Lappe (BioVis, 2011)

CMView: Interactive contact map visualization and analysis. - Corinna Vehlow; Henning Stehr; Matthias Winkelmann; Jose M. Duarte; Lars Petzold; Juliane Dinse; Michael Lappe (Bioinform., 2011)

Identifying peaks in *-seq data using shape information. - Francesco Strino; Michael Lappe (BMC Bioinform., 2016)