A Statistical Theory of Sequence Alignment with Gaps. - Dirk Drasdo; Terence Hwa; Michael Lässig (ISMB, 1998)

Optimal detection of sequence similarity by local alignment. - Terence Hwa; Michael Lässig (RECOMB, 1998)

Optimizing Smith-Waterman Alignments. - Rolf Olsen; Terence Hwa; Michael Lässig (Pacific Symposium on Biocomputing, 1999)

Scaling Laws and Similarity Detection in Sequence Alignment with Gaps. - Dirk Drasdo; Terence Hwa; Michael Lässig (J. Comput. Biol., 2000)

From biophysics to evolutionary genetics: statistical aspects of gene regulation. - Michael Lässig (BMC Bioinform., 2007)

From protein interactions to functional annotation: graph alignment in Herpes. - Michal Kolár; Michael Lässig; Johannes Berg (BMC Syst. Biol., 2008)

Formation of Regulatory Modules by Local Sequence Duplication. - Armita Nourmohammad; Michael Lässig (PLoS Comput. Biol., 2011)

GraphAlignment: Bayesian pairwise alignment of biological networks. - Michal Kolár; Jörn Meier; Ville Mustonen; Michael Lässig; Johannes Berg (BMC Syst. Biol., 2012)

Energy landscapes of peptide-MHC binding. - Laura Collesano; Marta Luksza; Michael Lässig (PLoS Comput. Biol., 2024)