Michael Levin

CoRR, 2024

2023

Toward an ethics of autopoietic technology: Stress, care, and intelligence.

[BibT_eX]

[DOI]

Biosyst., September, 2023

Regulative development as a model for origin of life and artificial life studies.

[BibT_eX]

[DOI]

Biosyst., July, 2023

Control Flow in Active Inference Systems - Part II: Tensor Networks as General Models of Control Flow.

[BibT_eX]

[DOI]

IEEE Trans. Mol. Biol. Multi Scale Commun., June, 2023

Control Flow in Active Inference Systems - Part I: Classical and Quantum Formulations of Active Inference.

[BibT_eX]

[DOI]

IEEE Trans. Mol. Biol. Multi Scale Commun., June, 2023

Cellular signaling pathways as plastic, proto-cognitive systems: Implications for biomedicine.

[BibT_eX]

[DOI]

Patterns, May, 2023

Cellular Competency during Development Alters Evolutionary Dynamics in an Artificial Embryogeny Model.

[BibT_eX]

[DOI]

Lakshwin Shreesha

Entropy, January, 2023

SBMLtoODEjax: efficient simulation and optimization of ODE SBML models in JAX.

[BibT_eX]

[DOI]

CoRR, 2023

2022

The free energy principle induces neuromorphic development.

[BibT_eX]

[DOI]

Neuromorph. Comput. Eng., December, 2022

Biological underpinnings for lifelong learning machines.

[BibT_eX]

[DOI]

Nat. Mach. Intell., 2022

Active inference, morphogenesis, and computational psychiatry.

[BibT_eX]

[DOI]

Frontiers Comput. Neurosci., 2022

Minimal Developmental Computation: A Causal Network Approach to Understand Morphogenetic Pattern Formation.

[BibT_eX]

[DOI]

Santosh Manicka

Entropy, 2022

Metacognition as a Consequence of Competing Evolutionary Time Scales.

[BibT_eX]

[DOI]

Franz Kuchling

Entropy, 2022

Biology, Buddhism, and AI: Care as the Driver of Intelligence.

[BibT_eX]

[DOI]

Entropy, 2022

Competency in Navigating Arbitrary Spaces as an Invariant for Analyzing Cognition in Diverse Embodiments.

[BibT_eX]

[DOI]

Entropy, 2022

There's Plenty of Room Right Here: Biological Systems as Evolved, Overloaded, Multi-scale Machines.

[BibT_eX]

[DOI]

Joshua Clifford Bongard

CoRR, 2022

The scaling of goals via homeostasis: an evolutionary simulation, experiment and analysis.

[BibT_eX]

[DOI]

CoRR, 2022

The Free Energy Principle drives neuromorphic development.

[BibT_eX]

[DOI]

CoRR, 2022

Biological Robots: Perspectives on an Emerging Interdisciplinary Field.

[BibT_eX]

[DOI]

CoRR, 2022

Memory via Temporal Delays in weightless Spiking Neural Network.

[BibT_eX]

[DOI]

CoRR, 2022

Technological Approach to Mind Everywhere (TAME): an experimentally-grounded framework for understanding diverse bodies and minds.

[BibT_eX]

[DOI]

CoRR, 2022

Competition for finite resources as coordination mechanism for morphogenesis: An evolutionary algorithm study of digital embryogeny.

[BibT_eX]

[DOI]

Peter Smiley

Biosyst., 2022

Neurons as hierarchies of quantum reference frames.

[BibT_eX]

[DOI]

James F. Glazebrook

Biosyst., 2022

ColocQuiaL: a QTL-GWAS colocalization pipeline.

[BibT_eX]

[DOI]

Bioinform., 2022

Assessing Different Feature Selection Methods Applied to a Bulk RNA Sequencing Dataset with Regard to Biomedical Relevance.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning and Principles and Practice of Knowledge Discovery in Databases, 2022

2021

A cellular platform for the development of synthetic living machines.

[BibT_eX]

[DOI]

Joshua Clifford Bongard

Sci. Robotics, 2021

Metabolic limits on classical information processing by biological cells.

[BibT_eX]

[DOI]

Biosyst., 2021

Morphology changes induced by intercellular gap junction blocking: A reaction-diffusion mechanism.

[BibT_eX]

[DOI]

Javier Cervera

Salvador Mafe

Biosyst., 2021

A Comprehensive Conceptual and Computational Dynamics Framework for Autonomous Regeneration Systems.

[BibT_eX]

[DOI]

Tran Nguyen Minh-Thai

Sandhya Samarasinghe

Artif. Life, 2021

Scale invariant robot behavior with fractals.

[BibT_eX]

[DOI]

Rebecca Kramer-Bottiglio

Josh C. Bongard

Proceedings of the Robotics: Science and Systems XVII, Virtual Event, July 12-16, 2021., 2021

2020

A scalable pipeline for designing reconfigurable organisms.

[BibT_eX]

[DOI]

Proc. Natl. Acad. Sci. USA, 2020

Machine Learning-Driven Bioelectronics for Closed-Loop Control of Cells.

[BibT_eX]

[DOI]

Adv. Intell. Syst., 2020

Scalable sim-to-real transfer of soft robot designs.

[BibT_eX]

[DOI]

Rebecca Kramer-Bottiglio

Proceedings of the 3rd IEEE International Conference on Soft Robotics, 2020

Robot Cancer: what the bioelectrics of embryogenesis and regeneration can teach us about unconventional computing, cognition, and the software of life.

[BibT_eX]

[DOI]

Proceedings of the 2020 Conference on Artificial Life, 2020

2019

Neural control of body-plan axis in regenerating planaria.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2019

Modeling somatic computation with non-neural bioelectric networks.

[BibT_eX]

[DOI]

Santosh Manicka

CoRR, 2019

Automated shapeshifting for function recovery in damaged robots.

[BibT_eX]

[DOI]

Rebecca Kramer-Bottiglio

Josh C. Bongard

CoRR, 2019

Toward Modeling Regeneration via Adaptable Echo State Networks.

[BibT_eX]

[DOI]

Proceedings of the From Parallel to Emergent Computing, 1st Edition, 2019

2018

Inform: Efficient Information-Theoretic Analysis of Collective Behaviors.

[BibT_eX]

[DOI]

Frontiers Robotics AI, 2018

Slime mould: The fundamental mechanisms of biological cognition.

[BibT_eX]

[DOI]

Biosyst., 2018

The bioelectric code: An ancient computational medium for dynamic control of growth and form.

[BibT_eX]

[DOI]

Christopher J. Martyniuk

Biosyst., 2018

Pattern Regeneration in Coupled Networks.

[BibT_eX]

[DOI]

Douglas G. Moore

Sara Imari Walker

Proceedings of the 2018 Conference on Artificial Life, 2018

Modeling Cell Migration in a Simulated Bioelectrical Signaling Network for Anatomical Regeneration.

[BibT_eX]

[DOI]

Giordano B. S. Ferreira

Matthias Scheutz

Proceedings of the 2018 Conference on Artificial Life, 2018

From Physics to Pattern: Uncovering Pattern Formation in Tissue Electrophysiology.

[BibT_eX]

[DOI]

Micah Z. Brodsky

Proceedings of the 2018 Conference on Artificial Life, 2018

A Computational Framework for Autonomous Self-repair Systems.

[BibT_eX]

[DOI]

Tran Nguyen Minh-Thai

Jagannath Aryal

Sandhya Samarasinghe

V. Srinivasa Chakravarthy

Proceedings of the AI 2018: Advances in Artificial Intelligence, 2018

2017

A computational model of planarian regeneration.

[BibT_eX]

[DOI]

Abhishek De

Int. J. Parallel Emergent Distributed Syst., 2017

Modeling regenerative processes with membrane computing.

[BibT_eX]

[DOI]

Manuel García-Quismondo

Inf. Sci., 2017

Slime mould: the fundamental mechanisms of cognition.

[BibT_eX]

[DOI]

CoRR, 2017

Inform: A toolkit for information-theoretic analysis of complex systems.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE Symposium Series on Computational Intelligence, 2017

Introducing simulated stem cells into a bio-inspired cell-cell communication mechanism for structure regeneration.

[BibT_eX]

[DOI]

Giordano B. S. Ferreira

Matthias Scheutz

Proceedings of the 2017 IEEE Symposium Series on Computational Intelligence, 2017

Microfluidic platform to study intercellular connectivity through on-chip electrical impedance measurement.

[BibT_eX]

[DOI]

Proceedings of the IEEE 60th International Midwest Symposium on Circuits and Systems, 2017

Investigating the effects of noise on a cell-to-cell communication mechanism for structure regeneration.

[BibT_eX]

[DOI]

Giordano B. S. Ferreira

Matthias Scheutz

Proceedings of the Fourteenth European Conference Artificial Life, 2017

2016

MoCha: Molecular Characterization of Unknown Pathways.

[BibT_eX]

[DOI]

Jennifer Hammelman

J. Comput. Biol., 2016

Corrigendum to "On chirality of slime mould" [BioSystems 140 (2016) 23-27].

[BibT_eX]

[DOI]

Biosyst., 2016

On chirality of slime mould.

[BibT_eX]

[DOI]

Biosyst., 2016

Computational discovery and <i>in vivo</i> validation of <i>hnf4</i> as a regulatory gene in planarian regeneration.

[BibT_eX]

[DOI]

Junji Morokuma

Bioinform., 2016

Dynamic Structure Discovery and Repair for 3D Cell Assemblages.

[BibT_eX]

[DOI]

Proceedings of the Fifteenth International Conference on the Simulation and Synthesis of Living Systems, 2016

A Level Set Approach to Simulating Xenopus laevis Tail Regeneration.

[BibT_eX]

[DOI]

Jason H. Rife

Zachary Serlin

Proceedings of the Fifteenth International Conference on the Simulation and Synthesis of Living Systems, 2016

2015

Inferring Regulatory Networks from Experimental Morphological Phenotypes: A Computational Method Reverse-Engineers Planarian Regeneration.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2015

2014

Design of a flexible component gathering algorithm for converting cell-based models to graph representations for use in evolutionary search.

[BibT_eX]

[DOI]

BMC Bioinform., 2014

Limbform: a functional ontology-based database of limb regeneration experiments.

[BibT_eX]

[DOI]

Bioinform., 2014

2013

Planform: an application and database of graph-encoded planarian regenerative experiments.

[BibT_eX]

[DOI]

Taylor J. Malone

Bioinform., 2013

2012

Modeling Planarian Regeneration: A Primer for Reverse-Engineering the Worm.

[BibT_eX]

[DOI]

Wendy S. Beane

PLoS Comput. Biol., 2012

Citation-based bootstrapping for large-scale author disambiguation.

[BibT_eX]

[DOI]

J. Assoc. Inf. Sci. Technol., 2012

Morphogenetic fields in embryogenesis, regeneration, and cancer: Non-local control of complex patterning.

[BibT_eX]

[DOI]

Biosyst., 2012

2002

A Probabilistic Approach to the Descent Statistic.

[BibT_eX]

[DOI]

Richard Ehrenborg

Margaret A. Readdy

J. Comb. Theory, Ser. A, 2002

1994

Discontinuous and alternate q-system fractals.

[BibT_eX]

[DOI]

Comput. Graph., 1994

A Julia set model of field-directed morphogenesis: developmental biology and artificial life.

[BibT_eX]

[DOI]

Comput. Appl. Biosci., 1994

1978

An Introduction To DIAM Levels Of Abstraction In Accessing Information.

[BibT_eX]

[DOI]