FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis. - Sudhir Kumar 001; Charlotte Konikoff; Bernard Van Emden; Christopher Busick; Kailah T. Davis; Shuiwang Ji; Lin-Wei Wu; Hector Ramos; Thomas Brody; Sethuraman Panchanathan; Jieping Ye; Timothy L. Karr; et al. (Bioinform., 2011)

Exploring spatial patterns of gene expression from Fruit Fly embryogenesis on the iPhone. - Sudhir Kumar 001; Kelly Boccia; Michael McCutchan; Jieping Ye (Bioinform., 2012)

Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression. - Lei Yuan 001; Cheng Pan; Shuiwang Ji; Michael McCutchan; Zhi-Hua Zhou; Stuart J. Newfeld; Sudhir Kumar 001; Jieping Ye (Bioinform., 2014)