CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences. - Xianfeng Chen; Thomas W. Laudeman; Paul J. Rushton; Thomas A. Spraggins; Michael P. Timko (BMC Bioinform., 2007)

TOBFAC: the database of tobacco transcription factors. - Paul J. Rushton; Marta T. Bokowiec; Thomas W. Laudeman; Jennifer F. Brannock; Xianfeng Chen; Michael P. Timko (BMC Bioinform., 2008)

TOD-CUP: a gene expression rank-based majority vote algorithm for tissue origin diagnosis of cancers of unknown primary. - Yifei Shen; Qinjie Chu; Xinxin Yin; Yinjun He; Panpan Bai; Yunfei Wang; Weijia Fang; Michael P. Timko; Longjiang Fan; Weiqin Jiang (Briefings Bioinform., 2021)

scDetect: a rank-based ensemble learning algorithm for cell type identification of single-cell RNA sequencing in cancer. - Yifei Shen; Qinjie Chu; Michael P. Timko; Longjiang Fan (Bioinform., 2021)

Multi-omics molecular biomarkers and database of osteoarthritis. - Jianhua Li; Xiaotian Yang; Qinjie Chu; Lingjuan Xie; Yuwen Ding; Xiaoxu Xu; Michael P. Timko; Longjiang Fan (Database J. Biol. Databases Curation, 2022)

EMLI-ICC: an ensemble machine learning-based integration algorithm for metastasis prediction and risk stratification in intrahepatic cholangiocarcinoma. - Jian Ruan; Shuaishuai Xu; Ruyin Chen; Wenxin Qu; Qiong Li; Chanqi Ye; Wei Wu; Qi Jiang; Feifei Yan; Enhui Shen; Qinjie Chu; Yunlu Jia; et al. (Briefings Bioinform., 2022)

Detecting Plant VOC Traces Using Indoor Air Quality Sensors. - Seyed Hamidreza Nabaei; Ryan Lenfant; Viswajith Govinda Rajan; Dong Chen 016; Michael P. Timko; Bradford Campbell; Arsalan Heydarian (CoRR, 2025)