Blue Gene: A vision for protein science using a petaflop supercomputer. - Frances E. Allen; George S. Almási; Wanda Andreoni; Daniel K. Beece; Bruce J. Berne; Arthur A. Bright; José R. Brunheroto; Calin Cascaval; José G. Castaños; Paul Coteus; Paul Crumley; Alessandro Curioni; et al. (IBM Syst. J., 2001)

FLASHFLOOD: A 3D Field-based similarity search and alignment method for flexible molecules. - Michael Pitman; Wolfgang Huber; Hans W. Horn; Andreas Krämer; Julia E. Rice; William C. Swope (J. Comput. Aided Mol. Des., 2001)

Blue Matter, an application framework for molecular simulation on Blue Gene. - Blake G. Fitch; Robert S. Germain; Mark P. Mendell; Jed W. Pitera; Michael Pitman; Aleksandr Rayshubskiy; Yuk Yin Sham; Frank Suits; William C. Swope; T. J. Christopher Ward; Yuriy Zhestkov; Ruhong Zhou (J. Parallel Distributed Comput., 2003)

Blue matter on blue gene/L: massively parallel computation for biomolecular simulation. - Robert S. Germain; Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; Michael Pitman; Frank Suits; Mark Giampapa; T. J. Christopher Ward (CODES+ISSS, 2005)

Early Experience with Scientific Applications on the Blue Gene/L Supercomputer. - George Almási 001; Gyan Bhanot; Dong Chen 005; Maria Eleftheriou; Blake G. Fitch; Alan Gara; Robert S. Germain; John A. Gunnels; Manish Gupta 002; Philip Heidelberger; Michael Pitman; Aleksandr Rayshubskiy; et al. (Euro-Par, 2005)

Custom math functions for molecular dynamics. - Robert F. Enenkel; Blake G. Fitch; Robert S. Germain; Fred G. Gustavson; A. Martin; Mark P. Mendell; Jed W. Pitera; Michael Pitman; Aleksandr Rayshubskiy; Frank Suits; William C. Swope; T. J. Christopher Ward (IBM J. Res. Dev., 2005)

Overview of molecular dynamics techniques and early scientific results from the Blue Gene project. - Frank Suits; Michael Pitman; Jed W. Pitera; William C. Swope; Robert S. Germain (IBM J. Res. Dev., 2005)

Progress in Scaling Biomolecular Simulations to Petaflop Scale Platforms. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Robert S. Germain (Euro-Par Workshops, 2006)

Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Yuriy Zhestkov; Michael Pitman; Frank Suits; Alan Grossfield; Jed W. Pitera; William C. Swope; Ruhong Zhou; et al. (International Conference on Computational Science (2), 2006)

Molecular dynamics - Blue matter: approaching the limits of concurrency for classical molecular dynamics. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Robert S. Germain (SC, 2006)

Blue Matter: Scaling of N-body simulations to one atom per node. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Jed W. Pitera; William C. Swope; Robert S. Germain (IBM J. Res. Dev., 2008)

The use of resource list servers in IMS presence for developing networks. - Michael Pitman; Neco Ventura (ICUMT, 2009)

Petascale computation performance of lightweight multiscale cardiac models using hybrid programming models. - Bernard J. Pope; Blake G. Fitch; Michael C. Pitman; John Jeremy Rice; Matthias Reumann (EMBC, 2011)

Performance of Hybrid Programming Models for Multiscale Cardiac Simulations: Preparing for Petascale Computation. - Bernard J. Pope; Blake G. Fitch; Michael Pitman; John Jeremy Rice; Matthias Reumann (IEEE Trans. Biomed. Eng., 2011)