Large scale database scrubbing using object oriented software components. - Robert L. Herting Jr.; Michael R. Barnes (AMIA, 1998)

Effective audit trails-a taxonomy for determination of information requirements. - Phillip V. Asaro; Robert L. Herting Jr.; A. C. Roth; Michael R. Barnes (AMIA, 1999)

Using external data sources to improve audit trail analysis. - Robert L. Herting Jr.; Phillip V. Asaro; A. C. Roth; Michael R. Barnes (AMIA, 1999)

Navigating the HapMap. - Michael R. Barnes (Briefings Bioinform., 2006)

Goldsurfer2 (Gs2): A comprehensive tool for the analysis and visualization of genome wide association studies. - Fredrik Pettersson; Andrew P. Morris; Michael R. Barnes; Lon R. Cardon (BMC Bioinform., 2008)

Spectrum: fast density-aware spectral clustering for single and multi-omic data. - Christopher R. John; David S. Watson; Michael R. Barnes; Costantino Pitzalis; Myles J. Lewis (Bioinform., 2020)

visxhclust: An R Shiny package for visual exploration of hierarchical clustering. - Rafael Henkin; Michael R. Barnes (J. Open Source Softw., 2022)

GEOexplorer: a webserver for gene expression analysis and visualisation. - Guy P. Hunt; Luigi Grassi; Rafael Henkin; Fabrizio Smeraldi; Thomas P. Spargo; Renata Kabiljo; Sulev Koks; Zina M. Ibrahim; Richard J. B. Dobson; Ammar Al-Chalabi; Michael R. Barnes; Alfredo Iacoangeli (Nucleic Acids Res., 2022)

Multi-Stain Self-Attention Graph Multiple Instance Learning Pipeline for Histopathology Whole Slide Images. - Amaya Gallagher-Syed; Luca Rossi 011; Felice Rivellese; Costantino Pitzalis; Myles J. Lewis; Michael R. Barnes; Gregory G. Slabaugh (BMVC, 2023)

Automated segmentation of rheumatoid arthritis immunohistochemistry stained synovial tissue. - Amaya Gallagher-Syed; Abbas Khan; Felice Rivellese; Costantino Pitzalis; Myles J. Lewis; Gregory G. Slabaugh; Michael R. Barnes (CoRR, 2023)

MUSTANG: Multi-Stain Self-Attention Graph Multiple Instance Learning Pipeline for Histopathology Whole Slide Images. - Amaya Gallagher-Syed; Luca Rossi 011; Felice Rivellese; Costantino Pitzalis; Myles J. Lewis; Michael R. Barnes; Gregory G. Slabaugh (CoRR, 2023)

Multiple Disciplinary Data Work Practices in Artificial Intelligence Research: a Healthcare Case Study in the UK. - Rafael Henkin; Elizabeth Remfry; Duncan J. Reynolds; Megan Clinch; Michael R. Barnes (CoRR, 2023)

Going Beyond H&E and Oncology: How Do Histopathology Foundation Models Perform for Multi-stain IHC and Immunology? - Amaya Gallagher-Syed; Elena Pontarini; Myles J. Lewis; Michael R. Barnes; Gregory G. Slabaugh (CoRR, 2024)

Exploring Long-Term Prediction of Type 2 Diabetes Microvascular Complications. - Elizabeth Remfry; Rafael Henkin; Michael R. Barnes; Aakanksha Naik (CoRR, 2024)

BioX-CPath: Biologically-driven Explainable Diagnostics for Multistain IHC Computational Pathology. - Amaya Gallagher-Syed; Henry Senior; Omnia Alwazzan; Elena Pontarini; Michele Bombardieri; Costantino Pitzalis; Myles J. Lewis; Michael R. Barnes; Luca Rossi 011; Gregory G. Slabaugh (CVPR, 2025)