Using Your Body for Authentication: A Biometrics Guide for System Administrators. - Michael R. Crusoe (LISA, 2005)

The khmer software package: enabling efficient nucleotide sequence analysis. - Michael R. Crusoe; Hussien F. Alameldin; Sherine Awad; Elmar Boucher; Adam Caldwell; Reed Cartwright; Amanda Charbonneau; Bede Constantinides; Greg Edvenson; Scott A. Fay; Jacob Fenton; Thomas Fenzl; et al. (F1000Research, 2015)

Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis. - Steffen Möller; Stuart W. Prescott; Lars Wirzenius; Petter Reinholdtsen; Brad Chapman; Pjotr Prins; Stian Soiland-Reyes; Fabian Klötzl; Andrea Bagnacani; Matús Kalas; Andreas Tille; Michael R. Crusoe (Data Sci. Eng., 2017)

Using bio.tools to generate and annotate workbench tool descriptions. - Kenzo-Hugo Hillion; Ivan Kuzmin; Anton Khodak; Eric Rasche; Michael R. Crusoe; Hedi Peterson; Jon C. Ison; Hervé Ménager (F1000Research, 2017)

khmer release v2.1: software for biological sequence analysis. - Daniel S. Standage; Ali yari; Lisa J. Cohen; Michael R. Crusoe; Tim Head; Luiz Irber; Shannon E. K. Joslin; N. B. Kingsley; Kevin D. Murray; Russell Y. Neches; Camille Scott; Ryan Shean; et al. (J. Open Source Softw., 2017)

Search for Computational Workflow Synergies in Reproducible Research Data Analyses in Particle Physics and Life Sciences. - Tibor Simko; Kyle Cranmer; Michael R. Crusoe; Lukas Heinrich; Anton Khodak; Dinos Kousidis; Diego Rodriguez (eScience, 2018)

Capturing interoperable reproducible workflows with Common Workflow Language. - Stian Soiland-Reyes; Farah Zaib Khan; Richard O. Sinnott; Andrew Lonie; Michael R. Crusoe; Carole A. Goble (RO, 2018)

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics. - Shakuntala Baichoo; Yassine Souilmi; Sumir Panji; Gerrit Botha; Ayton Meintjes; Scott Hazelhurst; Hocine Bendou; Eugene de Beste; Phelelani T. Mpangase; Oussema Souiai; Mustafa Alghali; Long Yi; et al. (BMC Bioinform., 2018)

Recommendations for the packaging and containerizing of bioinformatics software. - Björn A. Grüning; Olivier Sallou; Pablo A. Moreno; Felipe da Veiga Leprevost; Hervé Ménager; Dan Søndergaard; Hannes L. Röst; Timo Sachsenberg; Brian O'Connor; Fábio Madeira; Victoria Dominguez Del Angel; Michael R. Crusoe; et al. (F1000Research, 2018)

nipy/nipype: 1.2.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.3. - Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0-rc1. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.4.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; David Gage Ellis; Benjamin Yvernault; Carlo Hämäläinen; Michael Philipp Notter; Taylor Salo; et al. (Zenodo, 2019)

Supercomputing with MPI meets the Common Workflow Language standards: an experience report. - Rupert W. Nash; Michael R. Crusoe; Max Kontak; Nick Brown 002 (WORKS@SC, 2020)

Nine Best Practices for Research Software Registries and Repositories: A Concise Guide. - Alain Monteil; Alejandra N. González-Beltrán; Alexandros Ioannidis; Alice Allen; Allen Lee; Anita E. Bandrowski; Bruce E. Wilson; Bryce D. Mecum; Caifan Du; Carly Robinson; Daniel Garijo; Daniel S. Katz; et al. (CoRR, 2020)

FAIR Computational Workflows. - Carole A. Goble; Sarah Cohen-Boulakia; Stian Soiland-Reyes; Daniel Garijo; Yolanda Gil; Michael R. Crusoe; Kristian Peters; Daniel Schober (Data Intell., 2020)

MGnify: the microbiome analysis resource in 2020. - Alex L. Mitchell; Alexandre Almeida; Martin Beracochea; Miguel A. Boland; Josephine Burgin; Guy Cochrane; Michael R. Crusoe; Varsha Kale; Simon C. Potter; Lorna J. Richardson; Ekaterina A. Sakharova; Maxim Scheremetjew; et al. (Nucleic Acids Res., 2020)

nipy/nipype: 1.4.1. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.4.2. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.5.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nipype: 1.5.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

Workflows Community Summit: Bringing the Scientific Workflows Community Together. - Rafael Ferreira da Silva; Henri Casanova; Kyle Chard; Dan Laney; Dong H. Ahn; Shantenu Jha; Carole A. Goble; Lavanya Ramakrishnan; J. Luc Peterson; Bjoern Enders; Douglas Thain; Ilkay Altintas; et al. (CoRR, 2021)

Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language. - Michael R. Crusoe; Sanne Abeln; Alexandru Iosup; Peter Amstutz; John Chilton; Nebojsa Tijanic; Hervé Ménager; Stian Soiland-Reyes; Carole A. Goble (CoRR, 2021)

Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development. - Rafael Ferreira da Silva; Henri Casanova; Kyle Chard; Tainã Coleman; Dan Laney; Dong H. Ahn; Shantenu Jha; Dorran Howell; Stian Soiland-Reyes; Ilkay Altintas; Douglas Thain; Rosa Filgueira; et al. (CoRR, 2021)

Perspectives on automated composition of workflows in the life sciences. - Anna-Lena Lamprecht; Magnus Palmblad; Jon C. Ison; Veit Schwämmle; Mohammad Sadnan Al Manir; Ilkay Altintas; Christopher J. O. Baker; Ammar Ben Hadj Amor; Salvador Capella-Gutiérrez; Paulos Charonyktakis; Michael R. Crusoe; Yolanda Gil; et al. (F1000Research, 2021)

Methods included. - Michael R. Crusoe; Sanne Abeln; Alexandru Iosup; Peter Amstutz; John Chilton; Nebojsa Tijanic; Hervé Ménager; Stian Soiland-Reyes; Bogdan Gavrilovic; Carole A. Goble; The Cwl Community (Commun. ACM, 2022)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)

The EOSC-Life Workflow Collaboratory for the Life Sciences. - Carole A. Goble; Finn Bacall; Stian Soiland-Reyes; Stuart Owen; Ignacio Eguinoa; Bert Droesbeke; Hervé Ménager; Laura Rodríguez-Navas; José María Fernández 001; Björn A. Grüning; Simone Leo; Luca Pireddu; et al. (CoRDI, 2023)

Workflows Community Summit 2022: A Roadmap Revolution. - Rafael Ferreira da Silva; Rosa M. Badia; Venkat Bala; Debbie Bard; Peer-Timo Bremer; Ian Buckley; Silvina Caíno-Lores; Kyle Chard; Carole A. Goble; Shantenu Jha; Daniel S. Katz; Daniel E. Laney; et al. (CoRR, 2023)

Recording provenance of workflow runs with RO-Crate. - Simone Leo; Michael R. Crusoe; Laura Rodríguez-Navas; Raül Sirvent; Alexander Kanitz; Paul De Geest; Rudolf Wittner; Luca Pireddu; Daniel Garijo; José M. Fernández; Iacopo Colonnelli; Matej Gallo; et al. (CoRR, 2023)

Applying the FAIR Principles to Computational Workflows. - Sean R. Wilkinson; Meznah Aloqalaa; Khalid Belhajjame; Michael R. Crusoe; Bruno de Paula Kinoshita; Luiz Gadelha; Daniel Garijo; Ove Johan Ragnar Gustafsson; Nick S. Juty; Sehrish Kanwal; Farah Zaib Khan; Johannes Köster; et al. (CoRR, 2024)

Workflows Community Summit 2024: Future Trends and Challenges in Scientific Workflows. - Rafael Ferreira da Silva; Deborah Bard; Kyle Chard; Shaun De Witt; Ian T. Foster; Tom Gibbs; Carole A. Goble; William F. Godoy; Johan Gustafsson 001; Utz-Uwe Haus; Stephen Hudson; Shantenu Jha; et al. (CoRR, 2024)