A Formal Framework for Representing Diagnosis Strategies in Model-Based Diagnosis Systems. - Wolfgang Nejdl; Peter Fröhlich 001; Michael Schroeder 001 (IJCAI, 1995)

A Deliberative and Reactive Diagnosis Agent Based on Logic Programming. - Michael Schroeder 001; Iara de Almeida Móra; Luís Moniz Pereira (ICTAI, 1996)

Design and Implementation of Diagnostic Strategies Using Modal Logic. - Peter Fröhlich 001; Wolfgang Nejdl; Michael Schroeder 001 (JELIA, 1996)

Distributed Diagnosis by Vivid Agents. - Michael Schroeder 001; Gerd Wagner 001 (Agents, 1997)

Vivid Agents Arguing about Distributed Extended Logic Programs. - Michael Schroeder 001; Iara de Almeida Móra; José Júlio Alferes (EPIA, 1997)

REVISE: Logic Programming and Diagnosis. - Carlos Viegas Damásio; Luís Moniz Pereira; Michael Schroeder 001 (LPNMR, 1997)

Diagnostic Agents for Distributed Systems. - Peter Fröhlich 001; Iara de Almeida Móra; Wolfgang Nejdl; Michael Schroeder 001 (ModelAge Workshop, 1997)

Working Group Report on Collaborative Agents in Distributed Web Applications. - Robert Tolksdorf; Ted Goddard; Muralidharan Srinivasan; Stefan Fünfrocken; Michael Schroeder 001 (WETICE, 1997)

Methodological foundations for agent-based systems. - Michael Fisher 001; Jörg P. Müller; Michael Schroeder 001; Geof Staniford; Gerd Wagner 001 (Knowl. Eng. Rev., 1997)

Ultima Ratio: Should Hamlet kill Claudius? - Michael Schroeder 001; Daniela Alina Plewe; Andreas Raab (Agents, 1998)

Strategies in Model-Based Diagnosis. - Peter Fröhlich 001; Wolfgang Nejdl; Michael Schroeder 001 (J. Autom. Reason., 1998)

Using Singular Value Decomposition to Visualise Relations Within Multi-Agent Systems. - Michael Schroeder 001 (Agents, 1999)

Verification of Business Processes for a Correspondence Handling Center Using CCS. - Michael Schroeder 001 (EUROVAV, 1999)

Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT. - Steffen Möller; Michael J. Wise; David P. Kreil; Michael Schroeder 001; D. Gilbest; Rolf Apweiler (German Conference on Bioinformatics, 1999)

An In-Service Agent Monitoring and Analysis System. - Zhan Cui; Brian Odgers; Michael Schroeder 001 (ICTAI, 1999)

ULTIMA RATIO - A Visual Language for Argumentation. - Michael Schroeder 001; Daniela Alina Plewe; Andreas Raab (IV, 1999)

An Efficient Argumentation Framework for Negtiating Autonomous Agents. - Michael Schroeder 001 (MAAMAW, 1999)

Negotiation in multi-agent systems. - Martin Beer; Mark d'Inverno; Michael Luck; Nick R. Jennings; Chris Preist; Michael Schroeder 001 (Knowl. Eng. Rev., 1999)

Mobile Agents for Distributed Processing. - Penny Noy; Michael Schroeder 001 (Agents Workshop on Infrastructure for Multi-Agent Systems, 2000)

Rough traders and intelligent clients. - Michael Schroeder 001; Julie A. McCann; Dan Haynes (Agents, 2000)

Trading without Explicit Ontologies. - Michael Schroeder 001; Julie A. McCann; Dan Haynes (AMEC, 2000)

FURY: Fuzzy Unification and Resolution Based on Edit Distance. - David R. Gilbert; Michael Schroeder 001 (BIBE, 2000)

Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data. - Jacques van Helden; David R. Gilbert; Lorenz Wernisch; Michael Schroeder 001; Shoshana J. Wodak (JOBIM, 2000)

Vivid Agents: Theory, Architecture, and Applications. - Michael Schroeder 001; Gerd Wagner 001 (Appl. Artif. Intell., 2000)

Towards a visualization of arguing agents. - Michael Schroeder 001 (Future Gener. Comput. Syst., 2000)

Efficiency improvements for interactions of web-agents. - Michael Schroeder 001; Luke Boro; Julie A. McCann (Agents, 2001)

Multi-agent visualisation based on multivariate data. - Michael Schroeder 001; Penny Noy (Agents, 2001)

Flexible Load Balancing in Distributed Information Agent Systems. - Jacek Gomoluch; Michael Schroeder 001 (Multi-Agent-Systems and Applications, 2001)

A Quantitative and Qualitative Comparison of Distributed Information Processing Using Mobile Agents Realised in RMI and Voyager. - Patrick Cogan; Jacek Gomoluch; Michael Schroeder 001 (Int. J. Softw. Eng. Knowl. Eng., 2001)

Approaches to visualisation in bioinformatics: from dendrograms to Space Explorer. - Michael Schroeder 001; David R. Gilbert; Jacques van Helden; Penny Noy (Inf. Sci., 2001)

Information agents on the move. - Michael Schroeder 001; Jacek Gomoluch (Softw. Focus, 2001)

Defining like-minded agents with the aid of visualization. - Penny Noy; Michael Schroeder 001 (AAMAS, 2002)

Fuzzy argumentation for negotiating agents. - Michael Schroeder 001; Ralf Schweimeier (AAMAS, 2002)

Notions of Attack and Justified Arguments for Extended Logic Programs. - Ralf Schweimeier; Michael Schroeder 001 (ECAI, 2002)

Well-founded argumentation semantics for extended logic programming. - Ralf Schweimeier; Michael Schroeder 001 (NMR, 2002)

Using Extended Logic Programming for Alarm-Correlation in Cellular Phone Networks. - Carlos Viegas Damásio; Peter Fröhlich 001; Wolfgang Nejdl; Luís Moniz Pereira; Michael Schroeder 001 (Appl. Intell., 2002)

Consistent Integration of Non-reliable Heterogeneous Information Resources Applied to the Annotation of Transmembrane Proteins. - Steffen Möller; Michael Schroeder 001; Rolf Apweiler (Comput. Chem., 2002)

Arguments and Misunderstandings: Fuzzy Unification for Negotiating Agents. - Michael Schroeder 001; Ralf Schweimeier (CLIMA, 2002)

Interaction Monitoring and Termination Detection for Agent Societies: Preliminary Results. - Tshiamo Motshegwa; Michael Schroeder 001 (ESAW, 2003)

Advancing Profile Use in Agent Societies. - Penny Noy; Michael Schroeder 001 (ESAW, 2003)

Fast and efficient computation of domain-domaininteractions from known protein structures in the PDB. - Panos Dafas; Dan M. Bolser; Jacek Gomoluch; Jong-Chan Park; Michael Schroeder 001 (German Conference on Bioinformatics, 2003)

Market-based Resource Allocation for Grid Computing: A Model and Simulation. - Jacek Gomoluch; Michael Schroeder 001 (Middleware Workshops, 2003)

Structural Protein Interactions: From Months to Minutes. - Panos Dafas; Jacek Gomoluch; Alexander Kozlenkov; Michael Schroeder 001 (PARCO, 2003)

Visualisation and graph-theoretic analysis of a large-scale protein structural interactome. - Dan M. Bolser; Panos Dafas; Richard Harrington; Jong-Chan Park; Michael Schroeder 001 (BMC Bioinform., 2003)

Rule-based agents for the semantic web. - Jens Dietrich 001; Alexander Kozlenkov; Michael Schroeder 001; Gerd Wagner 001 (Electron. Commer. Res. Appl., 2003)

PROVA: Rule-Based Java-Scripting for a Bioinformatics Semantic Web. - Alexander Kozlenkov; Michael Schroeder 001 (DILS, 2004)

GoPubMed: ontology-based literature search applied to Gene Ontology and PubMed. - Ralph Delfs; Andreas Doms; Alexander Kozlenkov; Michael Schroeder 001 (German Conference on Bioinformatics, 2004)

Fuzzy Unification and Argumentation for Well-Founded Semantics. - Ralf Schweimeier; Michael Schroeder 001 (SOFSEM, 2004)

Using convex hulls to extract interaction interfaces from known structures. - Panos Dafas; Dan M. Bolser; Jacek Gomoluch; Jong-Chan Park; Michael Schroeder 001 (Bioinform., 2004)

Performance evaluation of market-based resource allocation for Grid computing. - Jacek Gomoluch; Michael Schroeder 001 (Concurr. Pract. Exp., 2004)

Grid-Computing. - François Bry; Wolfgang E. Nagel; Michael Schroeder 001 (Inform. Spektrum, 2004)

Integrating Gene Expression Data, Protein Interaction Data, and Ontology-Based Literature Searches. - Panos Dafas; Alexander Kozlenkov; Alan Robinson; Michael Schroeder 001 (Artificial Intelligence Methods And Tools For Systems Biology, 2004)

Structural Protein Interactions Predict Kinase-Inhibitor Interactions in Upregulated Pancreas Tumour Genes Expression Data. - Gihan Dawelbait; Christian Pilarsky; Yanju Zhang; Robert Grützmann; Michael Schroeder 001 (CompLife, 2005)

Using residue propensities and tightness of fit to improve rigid-body protein-docking. - Bingding Huang; Michael Schroeder 001 (German Conference on Bioinformatics, 2005)

PSIbase: a database of Protein Structural Interactome map (PSIMAP). - Sungsam Gong; Giseok Yoon; Insoo Jang; Dan M. Bolser; Panos Dafas; Michael Schroeder 001; Hansol Choi; Yoobok Cho; Kyungsook Han; Sunghoon Lee; Hwanho Choi; Michael Lappe; et al. (Bioinform., 2005)

Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). - Daeui Park; Semin Lee; Dan M. Bolser; Michael Schroeder 001; Michael Lappe; Donghoon Oh; Jong Bhak (Bioinform., 2005)

GoPubMed: exploring PubMed with the Gene Ontology. - Andreas Doms; Michael Schroeder 001 (Nucleic Acids Res., 2005)

A Parameterised Hierarchy of Argumentation Semantics for Extended Logic Programming and its Application to the Well-founded Semantics. - Ralf Schweimeier; Michael Schroeder 001 (Theory Pract. Log. Program., 2005)

A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants. - Annalisa Marsico; K. Tanuj Sapra; Daniel J. Muller; Michael Schroeder 001; Dirk Labudde (CompLife, 2006)

Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions. - Tobias Kuhn; Loïc Royer; Norbert E. Fuchs; Michael Schroeder 001 (DILS, 2006)

Prova: Rule-Based Java Scripting for Distributed Web Applications: A Case Study in Bioinformatics. - Alexander Kozlenkov; Rafael Peñaloza; Vivek Nigam; Loïc Royer; Gihan Dawelbait; Michael Schroeder 001 (EDBT Workshops, 2006)

Topic 17: High-Performance Bioinformatics. - Craig A. Stewart; Michael Schroeder 001; Concettina Guerra; Akihiko Konagaya (Euro-Par, 2006)

Classifying Permanent and Transient Protein Interactions. - Samatha Kottha; Michael Schroeder 001 (German Conference on Bioinformatics, 2006)

A Novel, Comprehensive Method to Detect and Predict Proteinprotein Interactions Applied to the Study of Vesicular Trafficking. - Christof Winter; Thorsten Baust; Bernard Hoflack; Michael Schroeder 001 (German Conference on Bioinformatics, 2006)

Sealife: A Semantic Grid Browser for the Life Sciences Applied to the Study of Infectious Diseases. - Michael Schroeder 001; Albert Burger; Patty Kostkova; Robert Stevens 001; Bianca Habermann; Rose Dieng-Kuntz (HealthGrid, 2006)

Ontologies and Text Mining as a Basis for a Semantic Web for the Life Sciences. - Andreas Doms; Vaida Jakoniene; Patrick Lambrix; Michael Schroeder 001; Thomas Wächter (Reasoning Web, 2006)

A corpus-driven approach for design, evolution and alignment of ontologies. - Thomas Wächter; André Wobst; Michael Schroeder 001; He Tan; Patrick Lambrix (WSC, 2006)

Equivalent binding sites reveal convergently evolved interaction motifs. - Andreas Henschel; Wan Kyu Kim; Michael Schroeder 001 (Bioinform., 2006)

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. - Joan Teyra; Andreas Doms; Michael Schroeder 001; M. Teresa Pisabarro (BMC Bioinform., 2006)

SCOPPI: a structural classification of protein-protein interfaces. - Christof Winter; Andreas Henschel; Wan Kyu Kim; Michael Schroeder 001 (Nucleic Acids Res., 2006)

The Many Faces of Protein-Protein Interactions: A Compendium of Interface Geometry. - Wan Kyu Kim; Andreas Henschel; Christof Winter; Michael Schroeder 001 (PLoS Comput. Biol., 2006)

Editorial - Semantic Web for Life Sciences. - Michael Schroeder 001; Eric Neumann (J. Web Semant., 2006)

07132 Report - Towards Interoperability of Biomedical Ontologies. - Mark A. Musen; Michael Schroeder 001; Barry Smith 001 (Towards Interoperability of Biomedical Ontologies, 2007)

Pattern Recognition of Single-Molecule Force Spectroscopy Data. - Dirk Labudde; Annalisa Marsico; K. Tanuj Sapra; Michael Schroeder 001 (ER Workshops, 2007)

Understanding of SMFS Barriers by Means of Energy Profiles. - Frank Dressel; Annalisa Marsico; Anne Tuukkanen; Michael Schroeder 001; Dirk Labudde (German Conference on Bioinformatics, 2007)

Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data. - Gihan Dawelbait; Christof Winter; Yanju Zhang; Christian Pilarsky; Robert Grützmann; Jörg-Christian Heinrich; Michael Schroeder 001 (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Agents in bioinformatics, computational and systems biology. - Emanuela Merelli; Giuliano Armano; Nicola Cannata; Flavio Corradini; Mark d'Inverno; Andreas Doms; Phillip W. Lord; Andrew C. R. Martin; Luciano Milanesi; Steffen Möller; Michael Schroeder 001; Michael Luck (Briefings Bioinform., 2007)

Clustering by common friends finds locally significant proteins mediating modules. - Bill Andreopoulos; Aijun An; Xiaogang Wang 007; Michalis Faloutsos; Michael Schroeder 001 (Bioinform., 2007)

A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy. - Annalisa Marsico; Dirk Labudde; K. Tanuj Sapra; Daniel J. Muller; Michael Schroeder 001 (Bioinform., 2007)

Using structural motif descriptors for sequence-based binding site prediction. - Andreas Henschel; Christof Winter; Wan Kyu Kim; Michael Schroeder 001 (BMC Bioinform., 2007)

Visualising protein interaction networks with power graphs. - Loïc Royer; Matthias Reimann; Bill Andreopoulos; Michael Schroeder 001 (BMC Syst. Biol., 2007)

Ontology learning with text mining: Two use cases in lipoprotein metabolism and toxicology. - Dimitra Alexopoulou; Thomas Wächter; Laura Pickersgill; Cecilia Eyre; Michael Schroeder 001 (Ontologies and Text Mining for Life Sciences, 2008)

GoPubMed: Exploring Pubmed with Ontological Background Knowledge. - Heiko Dietze; Dimitra Alexopoulou; Michael R. Alvers; Bill Barrio-Alvers; Andreas Doms; Jörg Hakenberg; Jan Mönnich; Conrad Plake; Andreas Reischuck; Loïc Royer; Thomas Wächter; Matthias Zschunke; et al. (Ontologies and Text Mining for Life Sciences, 2008)

Inter-species normalization of gene mentions with GNAT. - Jörg Hakenberg; Conrad Plake; Robert Leaman; Michael Schroeder 001; Graciela Gonzalez 001 (ECCB, 2008)

Mutation tagging with gene identifiers applied to membrane protein stability prediction. - Rainer Winnenburg; Conrad Plake; Michael Schroeder 001 (AIMM, 2008)

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? - Rainer Winnenburg; Thomas Wächter; Conrad Plake; Andreas Doms; Michael Schroeder 001 (Briefings Bioinform., 2008)

Terminologies for text-mining; an experiment in the lipoprotein metabolism domain. - Dimitra Alexopoulou; Thomas Wächter; Laura Pickersgill; Cecilia Eyre; Michael Schroeder 001 (BMC Bioinform., 2008)

A Semantic Web for bioinformatics: goals, tools, systems, applications. - Nicola Cannata; Michael Schroeder 001; Roberto Marangoni; Paolo Romano 001 (BMC Bioinform., 2008)

Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering. - Bill Andreopoulos; Dimitra Alexopoulou; Michael Schroeder 001 (Int. J. Data Min. Bioinform., 2008)

Unraveling Protein Networks with Power Graph Analysis. - Loïc Royer; Matthias Reimann; Bill Andreopoulos; Michael Schroeder 001 (PLoS Comput. Biol., 2008)

Searching Biomedical Literature with Anatomy Ontologies. - Thomas Wächter; Dimitra Alexopoulou; Heiko Dietze; Jörg Hakenberg; Michael Schroeder 001 (Anatomy Ontologies for Bioinformatics, 2008)

Identifying Hot Cancer and Novel Novel Cell-cycle Genes from Literature. - Loïc Royer; Conrad Plake; Michael Schroeder 001 (GCB, 2009)

Mining for Patterns of Semantic Link Usage: Do Domain Users Actually Like Semantic Browsing? - Ed de Quincey; Helen Oliver 001; Patty Kostkova; Gawesh Jawaheer; Gemma Madle; Gayo Diallo; Dimitra Alexopoulou; Michael Schroeder 001; Bianca Habermann; Khaled Khelif; Simon Jupp; Robert Stevens 001 (Web Intelligence/IAT Workshops, 2009)

A roadmap of clustering algorithms: finding a match for a biomedical application. - Bill Andreopoulos; Aijun An; Xiaogang Wang 007; Michael Schroeder 001 (Briefings Bioinform., 2009)

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy. - Dimitra Alexopoulou; Bill Andreopoulos; Heiko Dietze; Andreas Doms; Fabien Gandon; Jörg Hakenberg; Khaled Khelif; Michael Schroeder 001; Thomas Wächter (BMC Bioinform., 2009)

Triangle network motifs predict complexes by complementing high-error interactomes with structural information. - Bill Andreopoulos; Christof Winter; Dirk Labudde; Michael Schroeder 001 (BMC Bioinform., 2009)

GoWeb: a semantic search engine for the life science web. - Heiko Dietze; Michael Schroeder 001 (BMC Bioinform., 2009)

A user-centred evaluation framework for the Sealife semantic web browsers. - Helen Oliver 001; Gayo Diallo; Ed de Quincey; Dimitra Alexopoulou; Bianca Habermann; Patty Kostkova; Michael Schroeder 001; Simon Jupp; Khaled Khelif; Robert Stevens 001; Gawesh Jawaheer; Gemma Madle (BMC Bioinform., 2009)

Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. - Rainer Winnenburg; Conrad Plake; Michael Schroeder 001 (BMC Bioinform., 2009)

GoGene: gene annotation in the fast lane. - Conrad Plake; Loïc Royer; Rainer Winnenburg; Jörg Hakenberg; Michael Schroeder 001 (Nucleic Acids Res., 2009)

Semantic Search with GoPubMed. - Andreas Doms; Michael Schroeder 001 (REWERSE, 2009)

Semi-automated ontology generation within OBO-Edit. - Thomas Wächter; Michael Schroeder 001 (Bioinform., 2010)

Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins. - Annalisa Marsico; Andreas Henschel; Christof Winter; Anne Tuukkanen; Boris Vassilev; Kerstin Scheubert; Michael Schroeder 001 (BMC Bioinform., 2010)

MeMotif: a database of linear motifs in α-helical transmembrane proteins. - Annalisa Marsico; Kerstin Scheubert; Anne Tuukkanen; Andreas Henschel; Christof Winter; Rainer Winnenburg; Michael Schroeder 001 (Nucleic Acids Res., 2010)

SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions. - Saskia Preissner; Katharina Kroll; Mathias Dunkel; Christian Senger; Gady Goldsobel; Daniel Kuzman; Stefan Günther; Rainer Winnenburg; Michael Schroeder 001; Robert Preissner (Nucleic Acids Res., 2010)

How to Become a Group Leader? or Modeling Author Types Based on Graph Mining. - George Tsatsaronis 001; Iraklis Varlamis; Sunna Torge 001; Matthias Reimann; Kjetil Nørvåg; Michael Schroeder 001; Matthias Zschunke (TPDL, 2011)

Semantic search for the life sciences. - Michael Schroeder 001 (ISI, 2011)

DOG4DAG: semi-automated ontology generation in OBO-Edit and Protégé. - Thomas Wächter; Götz Fabian; Michael Schroeder 001 (SWAT4LS, 2011)

Old friends in new guise: repositioning of known drugs with structural bioinformatics. - V. Joachim Haupt; Michael Schroeder 001 (Briefings Bioinform., 2011)

The GNAT library for local and remote gene mention normalization. - Jörg Hakenberg; Martin Gerner; Maximilian Haeussler; Illés Solt; Conrad Plake; Michael Schroeder 001; Graciela Gonzalez 001; Goran Nenadic; Casey M. Bergman (Bioinform., 2011)

Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction. - Zengming Zhang; Yu Li; Biaoyang Lin; Michael Schroeder 001; Bingding Huang (Bioinform., 2011)

MetaDBSite: a meta approach to improve protein DNA-binding sites prediction. - Jing-Na Si; Zengming Zhang; Biaoyang Lin; Michael Schroeder 001; Bingding Huang (BMC Syst. Biol., 2011)

BioASQ: A Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering. - George Tsatsaronis 001; Michael Schroeder 001; Georgios Paliouras; Yannis Almirantis; Ion Androutsopoulos; Éric Gaussier; Patrick Gallinari; Thierry Artières; Michael R. Alvers; Matthias Zschunke; Axel-Cyrille Ngonga Ngomo (AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text, 2012)

Semantic Interoperability Between Clinical Research and Healthcare: The PONTE Approach. - Anastasios Tagaris; Efthymios Chondrogiannis; Vassiliki Andronikou; George Tsatsaronis 001; Konstantinos Mourtzoukos; Joseph Roumier; Nikolaos Matskanis; Michael Schroeder 001; Philippe Massonet; Dimitrios D. Koutsouris; Theodora A. Varvarigou (ESWC (Satellite Events), 2012)

Extending ontologies by finding siblings using set expansion techniques. - Götz Fabian; Thomas Wächter; Michael Schroeder 001 (Bioinform., 2012)

A Maximum-Entropy approach for accurate document annotation in the biomedical domain. - George Tsatsaronis 001; Natalia Macari; Sunna Torge 001; Heiko Dietze; Michael Schroeder 001 (J. Biomed. Semant., 2012)

Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes. - Christof Winter; Glen Kristiansen; Stephan Kersting; Janine Roy; Daniela Aust; Thomas Knösel; Petra Rümmele; Beatrix Jahnke; Vera Hentrich; Felix Rückert; Marco Niedergethmann; Wilko Weichert; et al. (PLoS Comput. Biol., 2012)

Answering Factoid Questions in the Biomedical Domain. - Dirk Weissenborn; George Tsatsaronis 001; Michael Schroeder 001 (BioASQ@CLEF, 2013)

Learning Formal Definitions for Biomedical Concepts. - George Tsatsaronis 001; Alina Petrova; Maria Kissa; Yue Ma 009; Felix Distel; Franz Baader; Michael Schroeder 001 (OWLED, 2013)

Automated Patent Categorization and Guided Patent Search using IPC as Inspired by MeSH and PubMed. - Daniel Eisinger; George Tsatsaronis 001; Markus Bundschus; Ulrich Wieneke; Michael Schroeder 001 (J. Biomed. Semant., 2013)

GeneCloud: Secure Cloud Computing for Biomedical Research. - Martin Beck; V. Joachim Haupt; Janine Roy; Jan Mönnich; René Jäkel; Michael Schroeder 001; Zerrin Isik (Trusted Cloud Computing, 2014)

Privacy-Preserving Cloud Computing for Biomedical Research. - Martin Beck; V. Joachim Haupt; Janine Roy; Jan Mönnich; René Jäkel; Michael Schroeder 001; Zerrin Isik (Trusted Cloud Computing, 2014)

Developing Semantic Search for the Patent Domain. - Daniel Eisinger; Jan Mönnich; Michael Schroeder 001 (IPaMin@KONVENS, 2014)

Network information improves cancer outcome prediction. - Janine Roy; Christof Winter; Zerrin Isik; Michael Schroeder 001 (Briefings Bioinform., 2014)

Formalizing biomedical concepts from textual definitions. - Alina Petrova; Yue Ma 009; George Tsatsaronis 001; Maria Kissa; Felix Distel; Franz Baader; Michael Schroeder 001 (J. Biomed. Semant., 2015)

Discovering relations between indirectly connected biomedical concepts. - Dirk Weissenborn; Michael Schroeder 001; George Tsatsaronis 001 (J. Biomed. Semant., 2015)

An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition. - George Tsatsaronis 001; Georgios Balikas; Prodromos Malakasiotis; Ioannis Partalas; Matthias Zschunke; Michael R. Alvers; Dirk Weissenborn; Anastasia Krithara; Sergios Petridis; Dimitris Polychronopoulos; Yannis Almirantis; John Pavlopoulos; et al. (BMC Bioinform., 2015)

PLIP: fully automated protein-ligand interaction profiler. - Sebastian Salentin; Sven Schreiber; V. Joachim Haupt; Melissa F. Adasme; Michael Schroeder 001 (Nucleic Acids Res., 2015)

MAGPIE: Simplifying access and execution of computational models in the life sciences. - Christoph Baldow; Sebastian Salentin; Michael Schroeder 001; Ingo Roeder; Ingmar Glauche (PLoS Comput. Biol., 2017)

Pioneering topological methods for network-based drug-target prediction by exploiting a brain-network self-organization theory. - Claudio Durán; Simone Daminelli; Josephine Maria Thomas; V. Joachim Haupt; Michael Schroeder 001; Carlo Vittorio Cannistraci (Briefings Bioinform., 2018)

Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases. - Florian Kaiser; Sebastian Bittrich; Sebastian Salentin; Christoph Leberecht; V. Joachim Haupt; Sarah Krautwurst; Michael Schroeder 001; Dirk Labudde (PLoS Comput. Biol., 2018)

UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands. - François Bonnardel; Julien Mariethoz; Sebastian Salentin; Xavier Robin; Michael Schroeder 001; Serge Pérez; Frédérique Lisacek; Anne Imberty (Nucleic Acids Res., 2019)

Toward an Understanding of Pan-Assay Interference Compounds and Promiscuity: A Structural Perspective on Binding Modes. - Sarah Naomi Bolz; Melissa F. Adasme; Michael Schroeder 001 (J. Chem. Inf. Model., 2021)

PLIP 2021: expanding the scope of the protein-ligand interaction profiler to DNA and RNA. - Melissa F. Adasme; Katja L. Linnemann; Sarah Naomi Bolz; Florian Kaiser; Sebastian Salentin; V. Joachim Haupt; Michael Schroeder 001 (Nucleic Acids Res., 2021)

Measuring Group Separability in Geometrical Space for Evaluation of Pattern Recognition and Dimension Reduction Algorithms. - Aldo Acevedo; Claudio Durán; Ming-Ju Kuo; Sara Ciucci; Michael Schroeder 001; Carlo Vittorio Cannistraci (IEEE Access, 2022)

Emati: a recommender system for biomedical literature based on supervised learning. - Özge Kart; Alexandre Mestiashvili; Kurt Lachmann; Richard Kwasnicki; Michael Schroeder 001 (Database J. Biol. Databases Curation, 2022)

NetRank Recovers Known Cancer Hallmark Genes as Universal Biomarker Signature for Cancer Outcome Prediction. - Ali H. Al-Fatlawi; Nazia Afrin; Cigdem Ozen; Negin Malekian; Michael Schroeder 001 (Frontiers Bioinform., 2022)

Decomposing compounds enables reconstruction of interaction fingerprints for structure-based drug screening. - Melissa F. Adasme; Sarah Naomi Bolz; Ali H. Al-Fatlawi; Michael Schroeder 001 (J. Cheminformatics, 2022)

Netrank: network-based approach for biomarker discovery. - Ali H. Al-Fatlawi; Eka Rusadze; Alexander Shmelkin; Negin Malekian; Cigdem Ozen; Christian Pilarsky; Michael Schroeder 001 (BMC Bioinform., 2023)