MTR-Viewer: identifying regions within genes under purifying selection. - Michael Silk; Slavé Petrovski; David B. Ascher (Nucleic Acids Res., 2019)

EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening. - Douglas E. V. Pires; Wandré N. P. Veloso; Yoochan Myung; Carlos H. M. Rodrigues; Michael Silk; Pâmela M. Rezende; Francislon Silva; Joicymara S. Xavier; João P. L. Velloso; Carlos Henrique da Silveira; David B. Ascher (Bioinform., 2020)

Identifying Genotype-Phenotype Correlations via Integrative Mutation Analysis. - Edward Airey; Stephanie Portelli; Joicymara S. Xavier; Yoochan Myung; Michael Silk; Malancha Karmakar; João P. L. Velloso; Carlos H. M. Rodrigues; Hardik H. Parate; Anjali Garg; Raghad Al-Jarf; Lucy Barr; et al. (Artificial Neural Networks, 3rd Edition, 2021)

MTR3D: identifying regions within protein tertiary structures under purifying selection. - Michael Silk; Douglas E. V. Pires; Carlos H. M. Rodrigues; Elston N. D'souza; Moshe Olshansky; Natalie Thorne; David B. Ascher (Nucleic Acids Res., 2021)

Bioinformatics Approaches to Predict Mutation Effects in the Binding Site of the Proangiogenic Molecule CD93. - Vittoria Cicaloni; Malancha Karmakar; Luisa Frusciante; Francesco Pettini; Anna Visibelli; Maurizio Orlandini; Federico Galvagni; Maurizio Mongiat; Michael Silk; Federica Nardi; David B. Ascher; Annalisa Santucci; et al. (Frontiers Bioinform., 2022)

Paralympic cripvertising: On the gendered self-representations of Paralympic athletes on social media. - Emma Pullen; Laura Mora; Michael Silk (New Media Soc., 2025)