DNA Physical Mapping: Three Ways Difficult. - Michael R. Fellows; Michael T. Hallett; Harold T. Wareham (ESA, 1993)

The Parameterized Complexity of Some Problems in Logic and Linguistics. - Bruce M. Kapron; Michael R. Fellows; Rodney G. Downey; Michael T. Hallett; Harold T. Wareham (LFCS, 1994)

Beyond NP-completeness for problems of bounded width: hardness for the W hierarchy. - Hans L. Bodlaender; Michael R. Fellows; Michael T. Hallett (STOC, 1994)

A compendium of parameterized complexity results. - Michael T. Hallett; Todd Wareham (SIGACT News, 1994)

Parameterized complexity analysis in computational biology. - Hans L. Bodlaender; Rodney G. Downey; Michael R. Fellows; Michael T. Hallett; Harold T. Wareham (Comput. Appl. Biosci., 1995)

Analogs and Duals of the MAST Problem for Sequences and Trees. - Michael R. Fellows; Michael T. Hallett; Chantal Korostensky; Ulrike Stege (ESA, 1998)

On the Multiple Gene Duplication Problem. - Michael R. Fellows; Michael T. Hallett; Ulrike Stege (ISAAC, 1998)

Hunting for Functionally Analogous Genes. - Michael T. Hallett; Jens Lagergren (FSTTCS, 2000)

New algorithms for the duplication-loss model. - Michael T. Hallett; Jens Lagergren (RECOMB, 2000)

A cross-comparison of a large dataset of genes. - Gina Cannarozzi; Michael T. Hallett; J. Norberg; Xianghong Zhou (Bioinform., 2000)

Darwin v. 2.0: an interpreted computer language for the biosciences. - Gaston H. Gonnet; Michael T. Hallett; Chantal Korostensky; Laurent Bernardin (Bioinform., 2000)

The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs. - Hans L. Bodlaender; Michael R. Fellows; Michael T. Hallett; Todd Wareham; Tandy J. Warnow (Theor. Comput. Sci., 2000)

On the Parameterized Complexity of Layered Graph Drawing. - Vida Dujmovic; Michael R. Fellows; Michael T. Hallett; Matthew Kitching; Giuseppe Liotta; Catherine McCartin; Naomi Nishimura; Prabhakar Ragde; Frances A. Rosamond; Matthew Suderman; Sue Whitesides; David R. Wood (ESA, 2001)

A Fixed-Parameter Approach to Two-Layer Planarization. - Vida Dujmovic; Michael R. Fellows; Michael T. Hallett; Matthew Kitching; Giuseppe Liotta; Catherine McCartin; Naomi Nishimura; Prabhakar Ragde; Frances A. Rosamond; Matthew Suderman; Sue Whitesides; David R. Wood (GD, 2001)

Dependable Computing in Virtual Laboratories. - Gustavo Alonso; Win Bausch; Cesare Pautasso; Ari Kahn; Michael T. Hallett (ICDE, 2001)

Efficient algorithms for lateral gene transfer problems. - Michael T. Hallett; Jens Lagergren (RECOMB, 2001)

Identifying the most significant pairwise correlations of residues in different positions of helices: the subset selection problem using least squares optimization. - Xianghong Zhou; Gareth Chelvanayagam; Michael T. Hallett (SAC, 2001)

Towards Identifying Lateral Gene Transfer Events. - Louigi Addario-Berry; Michael T. Hallett; Jens Lagergren (Pacific Symposium on Biocomputing, 2003)

Analogs & duals of the MAST problem for sequences & trees. - Michael R. Fellows; Michael T. Hallett; Ulrike Stege (J. Algorithms, 2003)

DePIE: Designing Primers for Protein Interaction Experiments. - Guoqing Lu; Michael T. Hallett; Stephanie Pollock; David Y. Thomas (Nucleic Acids Res., 2003)

Simultaneous identification of duplications and lateral transfers. - Michael T. Hallett; Jens Lagergren; Ali Tofigh (RECOMB, 2004)

The Hera database and its use in the characterization of endoplasmic reticulum proteins. - Michelle S. Scott; Guoqing Lu; Michael T. Hallett; David Y. Thomas (Bioinform., 2004)

Ancestral Maximum Likelihood of Evolutionary Trees Is Hard. - Louigi Addario-Berry; Benny Chor; Michael T. Hallett; Jens Lagergren; Alessandro Panconesi; Todd Wareham (J. Bioinform. Comput. Biol., 2004)

Towards Quality Control for DNA Microarrays. - Kaleigh Smith; Michael T. Hallett (J. Comput. Biol., 2004)

BIAS: Bioinformatics Integrated Application Software. - Greg Finak; N. Godin; Michael T. Hallett; François Pepin; Z. Rajabi; V. Srivastava; Z. Tang (Bioinform., 2005)

Refining Protein Subcellular Localization. - Michelle S. Scott; Sara J. Calafell; David Y. Thomas; Michael T. Hallett (PLoS Comput. Biol., 2005)

A Fixed-Parameter Approach to 2-Layer Planarization. - Vida Dujmovic; Michael R. Fellows; Michael T. Hallett; Matthew Kitching; Giuseppe Liotta; Catherine McCartin; Naomi Nishimura; Prabhakar Ragde; Frances A. Rosamond; Matthew Suderman; Sue Whitesides; David R. Wood (Algorithmica, 2006)

Tools for visually exploring biological networks. - Matthew Suderman; Michael T. Hallett (Bioinform., 2007)

A Faster FPT Algorithm for the Maximum Agreement Forest Problem. - Michael T. Hallett; Catherine McCartin (Theory Comput. Syst., 2007)

A Trade-Off between Sample Complexity and Computational Complexity in Learning Boolean Networks from Time-Series Data. - Theodore J. Perkins; Michael T. Hallett (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Simultaneous Identification of Duplications and Lateral Gene Transfers. - Ali Tofigh; Michael T. Hallett; Jens Lagergren (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Structural and Functional Characterization of a Caenorhabditis elegans Genetic Interaction Network within Pathways. - Benjamin Boucher; Anna Y. Lee; Michael T. Hallett; Sarah Jenna (PLoS Comput. Biol., 2016)

Building Applications for Interactive Data Exploration in Systems Biology. - Bjørn Fjukstad; Vanessa Dumeaux; Karina Standahl Olsen; Eiliv Lund; Michael T. Hallett; Lars Ailo Bongo (BCB, 2017)

Interactions between the tumor and the blood systemic response of breast cancer patients. - Vanessa Dumeaux; Bjørn Fjukstad; Hans E. Fjosne; Jan-Ole Frantzen; Marit Muri Holmen; Enno Rodegerdts; Ellen Schlichting; Anne-Lise Børresen-Dale; Lars Ailo Bongo; Eiliv Lund; Michael T. Hallett (PLoS Comput. Biol., 2017)

Reproducible Data Analysis Pipelines for Precision Medicine. - Bjørn Fjukstad; Vanessa Dumeaux; Michael T. Hallett; Lars Ailo Bongo (PDP, 2019)