The utility of multi-stack alignment and 3D longitudinal image registration to assess bone remodeling in rheumatoid arthritis patients from second generation HR-pQCT scans. - Scott C. Brunet; Michael T. Kuczynski; Jennifer L. Bhatla; Sophie Lemay; Yves Pauchard; Peter Salat; Cheryl Barnabe; Sarah L. Manske (BMC Medical Imaging, 2020)

The application and optimization of super-resolution reconstruction for isotropic out-of-plane MRI to study the musculoskeletal system. - Justin J. Tse; Luke Garland; Michael T. Kuczynski; Peter Salat; Yves Pauchard; Sarah L. Manske (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2021)

Bone and joint enhancement filtering: Application to proximal femur segmentation from uncalibrated computed tomography datasets. - Bryce A. Besler; Andrew S. Michalski; Michael T. Kuczynski; Aleena Abid; Nils D. Forkert; Steven K. Boyd (Medical Image Anal., 2021)

Reproducibility and repeatability of a semi-automated pipeline to quantify trapeziometacarpal joint angles using dynamic computed tomography. - Michael T. Kuczynski; Kendra Wang; Justin J. Tse; Tomasz Bugajski; Sarah L. Manske (BMC Medical Imaging, 2022)

ORMIR_XCT: A Python package for high resolution peripheral quantitative computed tomography image processing. - Michael T. Kuczynski; Nathan Neeteson; Kathryn S. Stok; Andrew Burghardt; Michelle A. Espinosa Hernandez; Jared Vicory; Justin J. Tse; Pholpat Durongbhan; Serena Bonaretti; Andy Kin On Wong; Steven K. Boyd; Sarah L. Manske (J. Open Source Softw., 2024)