Visualization of Lattice-Based Protein Folding Simulations. - Sebastian Potzsch; Gerik Scheuermann; Peter F. Stadler; Michael T. Wolfinger; Christoph Flamm (IV, 2006)

Memory-efficient RNA energy landscape exploration. - Martin Mann; Marcel Kucharík; Christoph Flamm; Michael T. Wolfinger (Bioinform., 2014)

TSSAR: TSS annotation regime for dRNA-seq data. - Fabian Amman; Michael T. Wolfinger; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler; Sven Findeiß (BMC Bioinform., 2014)

SHAPE directed RNA folding. - Ronny Lorenz; Dominik Luntzer; Ivo L. Hofacker; Peter F. Stadler; Michael T. Wolfinger (Bioinform., 2016)

Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Secondary Structure. - Maria Waldl; Sebastian Will; Michael T. Wolfinger; Ivo L. Hofacker; Peter F. Stadler (CIBB, 2019)

Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction. - Christoph Flamm; Julia Wielach; Michael T. Wolfinger; Stefan Badelt; Ronny Lorenz; Ivo L. Hofacker (Frontiers Bioinform., 2022)

KinPFN: Bayesian Approximation of RNA Folding Kinetics using Prior-Data Fitted Networks. - Dominik Scheuer; Frederic Runge; Jörg K. H. Franke; Michael T. Wolfinger; Christoph Flamm; Frank Hutter (ICLR, 2025)