Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos. - Ataur R. Katebi; Pawel Gniewek; Michael T. Zimmermann; Saras Saraswathi; Zhenming Gong; Christopher K. Tuggle; Andrzej Kloczkowski; Robert L. Jernigan (BCB, 2010)

Immunoglobulin functional motions and their effects on the complementarity determining regions. - Michael T. Zimmermann; Aris Skliros; Saras Saraswathi; Andrzej Kloczkowski; Robert L. Jernigan (BCB, 2010)

MAVEN: Motion Analysis and Visualization of Elastic Networks and Structural Ensembles. - Michael T. Zimmermann; Andrzej Kloczkowski; Robert L. Jernigan (BMC Bioinform., 2011)

ICGA-PSO-ELM Approach for Accurate Multiclass Cancer Classification Resulting in Reduced Gene Sets in Which Genes Encoding Secreted Proteins Are Highly Represented. - Saras Saraswathi; Suresh Sundaram 002; Narasimhan Sundararajan; Michael T. Zimmermann; Marit Nilsen-Hamilton (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Protein Loop Dynamics Are Complex and Depend on the Motions of the Whole Protein. - Michael T. Zimmermann; Robert L. Jernigan (Entropy, 2012)

A Computational Investigation on the Connection between Dynamics Properties of Ribosomal Proteins and Ribosome Assembly. - Brittany Burton; Michael T. Zimmermann; Robert L. Jernigan; Yongmei Wang (PLoS Comput. Biol., 2012)

Adverse Drug Event-based Stratification of Tumor Mutations: A Case Study of Breast Cancer Patients Receiving Aromatase Inhibitors. - Chen Wang; Michael T. Zimmermann; Naresh Prodduturi; Christopher G. Chute; Guoqian Jiang (AMIA, 2014)

A domain ontology for the Non-Coding RNA field. - Jingshan Huang; Karen Eilbeck; Judith A. Blake; Dejing Dou; Darren A. Natale; Alan Ruttenberg; Barry Smith 001; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; Bin Wu 008; Yongqun He; et al. (BIBM, 2015)

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. - Jingshan Huang; Karen Eilbeck; Barry Smith 001; Judith A. Blake; Dejing Dou; Weili Huang; Darren A. Natale; Alan Ruttenberg; Jun Huan; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; et al. (J. Biomed. Semant., 2016)

The development of non-coding RNA ontology. - Jingshan Huang; Karen Eilbeck; Barry Smith 001; Judith A. Blake; Dejing Dou; Weili Huang; Darren A. Natale; Alan Ruttenberg; Jun Huan; Michael T. Zimmermann; Guoqian Jiang; Yu Lin; et al. (Int. J. Data Min. Bioinform., 2016)

Characteristics of Protein Fold Space Exhibits Close Dependence on Domain Usage. - Michael T. Zimmermann; Fadi Towfic; Robert L. Jernigan; Andrzej Kloczkowski (IWBBIO (1), 2019)

Structural bioinformatics enhances mechanistic interpretation of genomic variation, demonstrated through the analyses of 935 distinct RAS family mutations. - Swarnendu Tripathi; Nikita R. Dsouza; Raul Urrutia; Michael T. Zimmermann (Bioinform., 2021)

An Analytical Approach that Combines Knowledge from Germline and Somatic Mutations Enhances Tumor Genomic Reanalyses in Precision Oncology. - Elias Devoe; Honey V. Reddi; Bradley W. Taylor; Samantha Stachowiak; Jennifer L. Geurts; Ben George; Reza Shaker; Raul Urrutia; Michael T. Zimmermann (J. Comput. Biol., 2025)