VTR 7.0: Next Generation Architecture and CAD System for FPGAs. - Jason Luu; Jeffrey Goeders; Michael Wainberg; Andrew Somerville; Thien Yu; Konstantin Nasartschuk; Miad Nasr; Sen Wang; Tim Liu; Nooruddin Ahmed; Kenneth B. Kent; Jason Helge Anderson; et al. (ACM Trans. Reconfigurable Technol. Syst., 2014)

Robust Optimization of Multiple Timing Constraints. - Michael Wainberg; Vaughn Betz (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2015)

Are Random Forests Truly the Best Classifiers? - Michael Wainberg; Babak Alipanahi; Brendan J. Frey (J. Mach. Learn. Res., 2016)

Integrative approaches to gene-gene, gene-disease and gene-environment mapping. - Michael Wainberg (2019)

To Transformers and Beyond: Large Language Models for the Genome. - Micaela E. Consens; Cameron Dufault; Michael Wainberg; Duncan Forster; Mehran Karimzadeh; Hani Goodarzi; Fabian J. Theis; Alan Moses; Bo Wang 044 (CoRR, 2023)

Case-control virtual histology elucidates cell types associated with cortical thickness differences in Alzheimer's disease. - Isabel Kerrebijn; Michael Wainberg; Peter Zhukovsky; Yuxiao Chen 007; Melanie Davie; Daniel Felsky; Shreejoy J. Tripathy (NeuroImage, 2023)

Transformers and genome language models. - Micaela E. Consens; Cameron Dufault; Michael Wainberg; Duncan Forster; Mehran Karimzadeh; Hani Goodarzi; Fabian J. Theis; Alan Moses; Bo Wang 044 (Nat. Mac. Intell., 2025)