rBiopaxParser - an R package to parse, modify and visualize BioPAX data. - Frank Kramer 001; Michaela Bayerlová; Florian Klemm; Annalen Bleckmann; Tim Beißbarth (Bioinform., 2013)

Comparative study on gene set and pathway topology-based enrichment methods. - Michaela Bayerlová; Klaus Jung; Frank Kramer 001; Florian Klemm; Annalen Bleckmann; Tim Beißbarth (BMC Bioinform., 2015)