The DC-THERA Directory: A Knowledge Management System to Support Collaboration on Dendritic Cell and Immunology Research. - Michaela Gündel; Ciro Scognamiglio; Marco Brandizi; Andrea Splendiani (SWAT4LS, 2008)

DC-THERA Directory, a Knowledge Management System for the support of the European Dendritic Cell Immunology Community. - Marco Brandizi; Michaela Gündel; Ciro Scognamiglio; Andrea Splendiani (SWAT4LS, 2009)

Knowledge sharing and collaboration in translational research, and the DC-THERA Directory. - Andrea Splendiani; Michaela Gündel; Jonathan M. Austyn; Duccio Cavalieri; Ciro Scognamiglio; Marco Brandizi (Briefings Bioinform., 2011)

ADO: A formal ontology for understanding structure of information and domain knowledge of Alzheimer's disease. - Ashutosh Malhotra; Michaela Gündel; Martin Hofmann-Apitius (ICBO, 2012)

HuPSON: the human physiology simulation ontology. - Michaela Gündel; Erfan Younesi; Ashutosh Malhotra; Jiali Wang; Hui Li; Bijun Zhang; Bernard de Bono; Heinz-Theodor Mevissen; Martin Hofmann-Apitius (J. Biomed. Semant., 2013)

CSEO - the Cigarette Smoke Exposure Ontology. - Erfan Younesi; Sam Ansari; Michaela Gündel; Shiva Ahmadi; Chris Coggins; Julia Hoeng; Martin Hofmann-Apitius; Manuel C. Peitsch (J. Biomed. Semant., 2014)

BEL2ABM: agent-based simulation of static models in Biological Expression Language. - Michaela Gündel; Charles Tapley Hoyt; Martin Hofmann-Apitius (Bioinform., 2018)