TRITON: a graphical tool for ligand-binding protein engineering. - Martin Prokop; Jan Adam; Zdenek Kríz; Michaela Wimmerová; Jaroslav Koca (Bioinform., 2008)

In Silico Mutagenesis and Docking Studies of Pseudomonas aeruginosa PA-IIL Lectin Predicting Binding Modes and Energies. - Jan Adam; Zdenek Kríz; Martin Prokop; Michaela Wimmerová; Jaroslav Koca (J. Chem. Inf. Model., 2008)

SiteBinder - an improved approach for comparing multiple protein structural motifs. Case studies on biologically important motifs. - David Sehnal; Radka Svobodová Vareková; Heinrich J. Huber; Stanislav Geidl; Crina-Maria Ionescu; Michaela Wimmerová; Jaroslav Koca (J. Cheminformatics, 2012)

In Silico Mutagenesis and Docking Study of Ralstonia solanacearum RSL Lectin: Performance of Docking Software To Predict Saccharide Binding. - Sushil Kumar Mishra; Jan Adam; Michaela Wimmerová; Jaroslav Koca (J. Chem. Inf. Model., 2012)

SiteBinder: An Improved Approach for Comparing Multiple Protein Structural Motifs. - David Sehnal; Radka Svobodová Vareková; Heinrich J. Huber; Stanislav Geidl; Crina-Maria Ionescu; Michaela Wimmerová; Jaroslav Koca (J. Chem. Inf. Model., 2012)

Engineering the Pseudomonas aeruginosa II lectin: designing mutants with changed affinity and specificity. - Zdenek Kríz; Jan Adam; Jana Mrázková; Petros Zotos; Thomais Chatzipavlou; Michaela Wimmerová; Jaroslav Koca (J. Comput. Aided Mol. Des., 2014)

MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes. - Radka Svobodová Vareková; Deepti Jaiswal Kundu; David Sehnal; Crina-Maria Ionescu; Stanislav Geidl; Lukás Pravda; Vladimír Horský; Michaela Wimmerová; Jaroslav Koca (Nucleic Acids Res., 2014)

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank. - David Sehnal; Radka Svobodová Vareková; Lukás Pravda; Crina-Maria Ionescu; Stanislav Geidl; Vladimír Horský; Deepti Jaiswal Kundu; Michaela Wimmerová; Jaroslav Koca (Nucleic Acids Res., 2015)

Fluorescent Cellular Assay for Screening Agents Inhibiting Pseudomonas aeruginosa Adherence. - Libuse Nosková; Bozena Kubícková; Lucie Vasková; Barbora Bláhová; Michaela Wimmerová; Marie Stiborová; Petr Hodek (Sensors, 2015)