Adaptive coarse-grained Monte Carlo simulation of reaction and diffusion dynamics in heterogeneous plasma membranes. - Stuart Collins; Michail Stamatakis; Dionisios G. Vlachos (BMC Bioinform., 2010)

Deterministic and stochastic population-level simulations of an artificial lac operon genetic network. - Michail Stamatakis; Kyriacos Zygourakis (BMC Bioinform., 2011)

Equivalence of on-lattice stochastic chemical kinetics with the well-mixed chemical master equation in the limit of fast diffusion. - Michail Stamatakis; Dionisios G. Vlachos (Comput. Chem. Eng., 2011)

Cell population balance and hybrid modeling of population dynamics for a single gene with feedback. - Michail Stamatakis (Comput. Chem. Eng., 2013)

On the stochastic modelling of surface reactions through reflected chemical Langevin equations. - Miguel Pineda; Michail Stamatakis (Comput. Chem. Eng., 2018)

Non-Equilibrium Thermodynamics and Stochastic Dynamics of a Bistable Catalytic Surface Reaction. - Miguel Pineda; Michail Stamatakis (Entropy, 2018)

Coupling the time-warp algorithm with the graph-theoretical kinetic Monte Carlo framework for distributed simulations of heterogeneous catalysts. - Srikanth Ravipati; Giannis D. Savva; Ilektra-Athanasia Christidi; Roland Guichard; Jens Nielsen; Romain Réocreux; Michail Stamatakis (Comput. Phys. Commun., 2022)