chipPCR: an R package to pre-process raw data of amplification curves. - Stefan Rödiger; Michal Burdukiewicz; Peter Schierack (Bioinform., 2015)

R as an Environment for Reproducible Analysis of DNA Amplification Experiments. - Stefan Rödiger; Michal Burdukiewicz; Konstantin Blagodatskikh; Michael Jahn; Peter Schierack (R J., 2015)

Enabling reproducible real-time quantitative PCR research: the RDML package. - Stefan Rödiger; Michal Burdukiewicz; Andrej-Nikolai Spiess; Konstantin Blagodatskikh (Bioinform., 2017)

HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments. - Weronika Puchala; Michal Burdukiewicz; Michal Kistowski; Katarzyna A. Dabrowska; Aleksandra E. Badaczewska-Dawid; Dominik Cysewski; Michal Dadlez; Yann Ponty (Bioinform., 2020)

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data. - Katarzyna Sidorczuk; Przemyslaw Gagat; Filip Pietluch; Jakub Kala; Dominik Rafacz; Laura Bakala; Jadwiga Slowik; Rafal Kolenda; Stefan Rödiger; Legana C. H. W. Fingerhut; Ira Cooke; Pawel Mackiewicz; et al. (Briefings Bioinform., 2022)

VisQualdex - the comprehensive guide to good data visualization. - Jan Sawicki; Michal Burdukiewicz (CoRR, 2022)

PCRedux: A Quantitative PCR Machine Learning Toolkit. - Michal Burdukiewicz; Andrej-Nikolai Spiess; Dominik Rafacz; Konstantin Blagodatskikh; Stefan Rödiger (J. Open Source Softw., 2022)

aSynPEP-DB: a database of biogenic peptides for inhibiting α-synuclein aggregation. - Carlos Pintado-Grima; Oriol Bárcenas; Valentín Iglesias; Jaime Santos; Zoe Manglano-Artuñedo; Irantzu Pallarès; Michal Burdukiewicz; Salvador Ventura (Database J. Biol. Databases Curation, 2023)

AmyloGraph: a comprehensive database of amyloid-amyloid interactions. - Michal Burdukiewicz; Dominik Rafacz; Agnieszka Barbach; Katarzyna Hubicka; Laura Bakala; Anna Lassota; Jakub Stecko; Natalia Szymanska; Jakub Wojciechowski; Dominika Kozakiewicz; Natalia Szulc; Jaroslaw Chilimoniuk; et al. (Nucleic Acids Res., 2023)

imputomics: web server and R package for missing values imputation in metabolomics data. - Jaroslaw Chilimoniuk; Krystyna Grzesiak; Jakub Kala; Dominik Nowakowski; Adam Kretowski; Rafal Kolenda; Michal Ciborowski; Michal Burdukiewicz (Bioinform., 2024)