HeartCyc: A Cardiac Cycle Process Ontology Based in the Ontology of Physics for Biology. - Daniel L. Cook; Michal Galdzicki; Maxwell Lewis Neal; José L. V. Mejino Jr.; John H. Gennari (ICBO, 2011)

Multiple ontologies in action: Composite annotations for biosimulation models. - John H. Gennari; Maxwell Lewis Neal; Michal Galdzicki; Daniel L. Cook (J. Biomed. Informatics, 2011)

Identifying High-Risk Components in Synthetic Biology. - Nikhil Gopal; Michal Galdzicki; Bryan Bartley; Evren Sirin; John H. Gennari (AMIA, 2013)

A C library for retrieving specific reactions from the BioModels database. - Maxwell Lewis Neal; Michal Galdzicki; J. T. Gallimore; Herbert M. Sauro (Bioinform., 2014)