Protein fragment reconstruction using various modeling techniques. - Michal J. Boniecki; Piotr Rotkiewicz; Jeffrey Skolnick; Andrzej Kolinski (J. Comput. Aided Mol. Des., 2003)

I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition. - Jerzy Orlowski; Michal J. Boniecki; Janusz M. Bujnicki (Bioinform., 2007)

MetalionRNA: computational predictor of metal-binding sites in RNA structures. - Anna Philips; Kaja Milanowska; Grzegorz Lach; Michal J. Boniecki; Kristian Rother; Janusz M. Bujnicki (Bioinform., 2012)

SimRNAweb: a web server for RNA 3D structure modeling with optional restraints. - Marcin Magnus; Michal J. Boniecki; Wayne Dawson; Janusz M. Bujnicki (Nucleic Acids Res., 2016)

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. - Pietro Boccaletto; Marcin Magnus; Catarina Almeida 002; Adriana Zyla; Astha Astha; Radoslaw Pluta; Blazej Baginski; Elzbieta Jankowska; Stanislaw Dunin-Horkawicz; Tomasz K. Wirecki; Michal J. Boniecki; Filip Stefaniak; et al. (Nucleic Acids Res., 2018)

RNAProbe: a web server for normalization and analysis of RNA structure probing data. - Tomasz K. Wirecki; Katarzyna Merdas; Agata Bernat; Michal J. Boniecki; Janusz M. Bujnicki; Filip Stefaniak (Nucleic Acids Res., 2020)