Efficient Algorithm for Microarray Probes Re-annotation. - Pawel Foszner; Aleksandra Gruca; Andrzej Polanski; Michal Marczyk; Roman Jaksik; Joanna Polanska (ICCCI (2), 2011)

Evaluation of available protein mass spectra pre-processing algorithms. - Michal Marczyk (Bio Algorithms Med Syst., 2011)

Comparison of Algorithms for Profile-Based Alignment of Low Resolution MALDI-ToF Spectra. - Michal Marczyk; Joanna Polanska; Andrzej Polanski (ICMMI, 2013)

Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition. - Michal Marczyk; Roman Jaksik; Andrzej Polanski; Joanna Polanska (BMC Bioinform., 2013)

A Note on Strong Causal Closedness and Completability of Classical Probability Spaces. - Michal Marczyk; Leszek Wronski (New Directions in the Philosophy of Science, 2014)

Methods for Quality Control of Low-resolution MALDI-ToF Spectra. - Michal Marczyk; Joanna Polanska (BIOINFORMATICS, 2014)

Automatic detection of outlying microarrays using multi-array quality metrics. - Michal Marczyk; Lukasz Krol; Joanna Polanska (IWBBIO, 2014)

Sources of High Variance between Probe Signals in Affymetrix Short Oligonucleotide Microarrays. - Roman Jaksik; Michal Marczyk; Joanna Polanska; Joanna Rzeszowska-Wolny (Sensors, 2014)

An Efficient Algorithm for Microarray Probes Re-annotation. - Pawel Foszner; Aleksandra Gruca; Andrzej Polanski; Michal Marczyk; Roman Jaksik; Joanna Polanska (Trans. Comput. Collect. Intell., 2014)

Modeling of Imaging Mass Spectrometry Data and Testing by Permutation for Biomarkers Discovery in Tissues. - Michal Marczyk; Grzegorz Drazek; Monika Pietrowska; Piotr Widlak; Joanna Polanska; Andrzej Polanski (ICCS, 2015)

Mixture Model Based Efficient Method for Magnetic Resonance Spectra Quantification. - Franciszek Binczyk; Michal Marczyk; Joanna Polanska (IWBBIO (2), 2015)

Improved Detection of 2D Gel Electrophoresis Spots by Using Gaussian Mixture Model. - Michal Marczyk (ISBRA, 2016)

Sensitivity, Specificity and Prioritization of Gene Set Analysis When Applying Different Ranking Metrics. - Joanna Zyla; Michal Marczyk; Joanna Polanska (PACBB, 2016)

Improving peak detection by Gaussian mixture modeling of mass spectral signal. - Michal Marczyk; Joanna Polanska; Andrzej Polanski (ICFSP, 2017)

Processing 2D Gel Electrophoresis Images for Efficient Gaussian Mixture Modeling. - Michal Marczyk (PACBB, 2017)

Reproducibility of Finding Enriched Gene Sets in Biological Data Analysis. - Joanna Zyla; Michal Marczyk; Joanna Polanska (PACBB, 2017)

Ranking metrics in gene set enrichment analysis: do they matter? - Joanna Zyla; Michal Marczyk; January 3rd Weiner; Joanna Polanska (BMC Bioinform., 2017)

BatchI: Batch effect Identification in high-throughput screening data using a dynamic programming algorithm. - Anna Papiez; Michal Marczyk; Joanna Polanska; Andrzej Polanski (Bioinform., 2019)

Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms. - Joanna Zyla; Michal Marczyk; Teresa Domaszewska; Stefan H. E. Kaufmann; Joanna Polanska; January 3rd Weiner (Bioinform., 2019)

GaMRed - Adaptive Filtering of High-Throughput Biological Data. - Michal Marczyk; Roman Jaksik; Andrzej Polanski; Joanna Polanska (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Autoencoder-based bone removal algorithm from x-ray images of the lung. - Seweryn Kalisz; Michal Marczyk (BIBE, 2021)

Finding Significantly Enriched Cells in Single-Cell RNA Sequencing by Single-Sample Approaches. - Anna Mrukwa; Michal Marczyk; Joanna Zyla (IWBBIO (2), 2022)

Investigating Sources of Zeros in 10× Single-Cell RNAseq Data. - Hanna Slowik; Joanna Zyla; Michal Marczyk (IWBBIO (2), 2022)

CIRCA: comprehensible online system in support of chest X-rays-based COVID-19 diagnosis. - Wojciech Prazuch; Aleksandra Suwalska; Marek Socha; Joanna Tobiasz; Pawel Foszner; Jerzy Jaroszewicz; Katarzyna Gruszczynska; Magdalena Sliwinska; Jerzy Walecki; Tadeusz Popiela; Grzegorz Przybylski; Andrzej Cieszanowski; et al. (CoRR, 2022)

POLCOVID: a multicenter multiclass chest X-ray database (Poland, 2020-2021). - Aleksandra Suwalska; Joanna Tobiasz; Wojciech Prazuch; Marek Socha; Pawel Foszner; Jerzy Jaroszewicz; Katarzyna Gruszczynska; Magdalena Sliwinska; Jerzy Walecki; Tadeusz Popiela; Grzegorz Przybylski; Mateusz Nowak 003; et al. (CoRR, 2022)

BRONCO: Automated modelling of the bronchovascular bundle using the Computed Tomography Images. - Wojciech Prazuch; Marek Socha; Anna Mrukwa; Aleksandra Suwalska; Agata Durawa; Malgorzata Jelitto-Górska; Katarzyna Dziadziuszko; Edyta Szurowska; Pawel Bozek; Michal Marczyk; Witold Rzyman; Joanna Polanska (CoRR, 2023)

Combining low-dose CT-based radiomics and metabolomics for early lung cancer screening support. - Joanna Zyla; Michal Marczyk; Wojciech Prazuch; Marek Socha; Aleksandra Suwalska; Agata Durawa; Malgorzata Jelitto-Górska; Katarzyna Dziadziuszko; Edyta Szurowska; Witold Rzyman; Piotr Widlak; Joanna Polanska (CoRR, 2023)

Pathological changes or technical artefacts? The problem of the heterogenous databases in COVID-19 CXR image analysis. - Marek Socha; Wojciech Prazuch; Aleksandra Suwalska; Pawel Foszner; Joanna Tobiasz; Jerzy Jaroszewicz; Katarzyna Gruszczynska; Magdalena Sliwinska; Mateusz Nowak 003; Barbara Gizycka; Gabriela Zapolska; Tadeusz Popiela; et al. (Comput. Methods Programs Biomed., 2023)

EpidermaQuant: Unsupervised detection and quantification of epidermal differentiation markers on H-DAB-stained images of reconstructed human epidermis. - Dawid Zamojski; Agnieszka Gogler; Dorota Scieglinska; Michal Marczyk (CoRR, 2024)

Passenger Location Estimation in Public Transport: Evaluating Methods and Camera Placement Impact. - Michal Marczyk; Aleksander Kempski; Marek Socha; Michal Cogiel; Pawel Foszner; Michal Staniszewski (IEEE Trans. Intell. Transp. Syst., 2024)

Post-Processing of Thresholding or Deep Learning Methods for Enhanced Tissue Segmentation of Whole-Slide Histopathological Images. - Michal Marczyk; Agata Wróbel; Julia Merta; Joanna Polanska (BIOSTEC (1), 2025)

Assessing the Influence of scRNA-Seq Data Normalization on Dimensionality Reduction Outcomes. - Marcel Ochocki; Michal Marczyk; Joanna Zyla (BIOSTEC (1), 2025)