The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection. - Michal Nánási; Tomás Vinar; Brona Brejová (CPM, 2010)

Estimating effective DNA database size via compression. - Martina Visnovská; Michal Nánási; Tomás Vinar; Brona Brejová (ITAT, 2010)

Probabilistic approaches to alignment with tandem repeats. - Michal Nánási; Tomás Vinar; Brona Brejová (Algorithms Mol. Biol., 2014)

Sequence annotation with HMMs: New problems and their complexity. - Michal Nánási; Tomás Vinar; Brona Brejová (Inf. Process. Lett., 2015)