AQUA-DUCT: a ligands tracking tool. - Tomasz Magdziarz; Karolina Mitusinska; Sandra Goldowska; Alicja Pluciennik; Michal Stolarczyk; Magdalena Lugowska; Artur Góra (Bioinform., 2017)

BALCONY: an R package for MSA and functional compartments of protein variability analysis. - Alicja Pluciennik; Michal Stolarczyk; Maria Bzówka; Agata Raczynska; Tomasz Magdziarz; Artur Góra (BMC Bioinform., 2018)

Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models. - Maureen A. Carey; Gregory L. Medlock; Michal Stolarczyk; William A. Petri Jr.; Jennifer L. Guler; Jason A. Papin (PLoS Comput. Biol., 2022)