SOAP, cleaning multiple alignments from unstable blocks. - Ari Löytynoja; Michel C. Milinkovitch (Bioinform., 2001)

A hidden Markov model for progressive multiple alignment. - Ari Löytynoja; Michel C. Milinkovitch (Bioinform., 2003)

A non-linear optimization procedure to estimate distances and instantaneous substitution rate matrices under the GTR model. - Daniele Catanzaro; Raffaele Pesenti; Michel C. Milinkovitch (Bioinform., 2006)

OligoFaktory: a visual tool for interactive oligonucleotide design. - Colas Schretter; Michel C. Milinkovitch (Bioinform., 2006)

MANTIS: a phylogenetic framework for multi-species genome comparisons. - Athanasia C. Tzika; Raphaël Helaers; Yves Van de Peer; Michel C. Milinkovitch (Bioinform., 2008)

MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics. - Raphaël Helaers; Michel C. Milinkovitch (BMC Bioinform., 2010)

A versatile high-resolution scanning system and its application to statistical analysis of lizards' skin colour time-evolution. - Liana Manukyan; António Martins; Sophie A. Montandon; Michel Bessant; Michel C. Milinkovitch (SIGGRAPH Posters, 2014)

Interactive Diffraction from Biological Nanostructures. - Daljit Singh Dhillon; Jeremie Teyssier; Michael Single; Iaroslav Gaponenko; Michel C. Milinkovitch; Matthias Zwicker (Comput. Graph. Forum, 2014)

Bifurcation Analysis of Reaction Diffusion Systems on Arbitrary Surfaces. - Daljit Singh J. Dhillon; Michel C. Milinkovitch; Matthias Zwicker (CoRR, 2016)

A living mesoscopic cellular automaton made of skin scales. - Liana Manukyan; Sophie A. Montandon; Anamarija Fofonjka; Stanislav Smirnov; Michel C. Milinkovitch (Nat., 2017)

Numerical approximation of a 3D mechanochemical interface model for skin patterning. - Luis Miguel De Oliveira Vilaca; Michel C. Milinkovitch; Ricardo Ruiz-Baier (J. Comput. Phys., 2019)

Coupling chemotaxis and growth poromechanics for the modelling of feather primordia patterning. - Nicolás A. Barnafi; Luis Miguel De Oliveira Vilaca; Michel C. Milinkovitch; Ricardo Ruiz-Baier (CoRR, 2022)

Study and Preliminary Modeling of Microstructure and Morphology of the Elephant Trunk Skin. - Behnam Kamare; Matteo Lo Preti; Irene Bernardeschi; Simone Lantean; Paule Dagenais; Michel C. Milinkovitch; Lucia Beccai (Living Machines (2), 2023)