Representation of a Medical Expertise using the Smalltalk Environment: Putting a Prototype to Work. - Michel Dojat; François Pachet (TOOLS (7), 1992)

Temporal Reasoning in a Medical Expertise. - Michel Dojat; Claudette Sayettat (SEKE, 1993)

Modeling Medical Reasoning with the Event Calculus: An Application to the Management of Mechanical Ventilation. - Luca Chittaro; Marco Del Rosso; Michel Dojat (AIME, 1995)

Representing Medical Context Using Rule-Based Object-Oriented Programming Techniques. - Michel Dojat; François Pachet (AIME, 1995)

A Real-Time Agent Model in an Asynchronous-Object Environment. - Zahia Guessoum; Michel Dojat (MAAMAW, 1996)

Realistic Model for Temporal Reasoning in Real-Time Patient Monitoring. - Michel Dojat (Appl. Artif. Intell., 1996)

Temporal Scenario Recognition for Intelligent Patient Monitoring. - Nicolas Ramaux; Dominique Fontaine; Michel Dojat (AIME, 1997)

NéoGanesh: a working system for the automated control of assisted ventilation in ICUs. - Michel Dojat; François Pachet; Zahia Guessoum; D. Touchard; A. Harf; L. Brochard (Artif. Intell. Medicine, 1997)

Using a general theory of time and change in patient monitoring: Experiment and evaluation. - Luca Chittaro; Michel Dojat (Comput. Biol. Medicine, 1997)

Scenario recognition for temporal reasoning in medical domains. - Michel Dojat; Nicolas Ramaux; Dominique Fontaine (Artif. Intell. Medicine, 1998)

The Use of the UMLS Knowledge Sources for the Design of a Domain Specific Ontology: A Practical Experience in Blood Transfusion. - Soumeya Achour; Michel Dojat; Jean-Marc Brethon; Gil Blain; Eric Lepage (AIMDM, 1999)

A Multi-agent System for MRI Brain Segmentation. - Laurence Germond; Michel Dojat; Christopher J. Taylor 001; Catherine Garbay (AIMDM, 1999)

Using UMLS Knowledge Sources for Designing a Domain Specific Ontology. - Soumeya Achour; Michel Dojat; Jean-Marc Brethon; Gil Blain; Eric Lepage (AMIA, 1999)

Knowledge acquisition environment for the design of a decision support system: application in blood transfusion. - Soumeya Achour; Michel Dojat; Claire Rieux; Philippe Bierling; Eric Lepage (AMIA, 1999)

Knowledge-based information management in intensive care and anesthesia. - Michel Dojat; Silvia Miksch; Jim Hunter (Artif. Intell. Medicine, 2000)

A cooperative framework for segmentation of MRI brain scans. - Laurence Germond; Michel Dojat; Christopher J. Taylor 001; Catherine Garbay (Artif. Intell. Medicine, 2000)

Dynamic Adaptation of Cooperative Agents for MRI Brain Scans Segmentation. - Nathalie Richard; Michel Dojat; Catherine Garbay (AIME, 2001)

Application of Information Technology: A UMLS-based Knowledge Acquisition Tool for Rule-based Clinical Decision Support System Development. - Soumeya Achour; Michel Dojat; Claire Rieux; Philippe Bierling; Eric Lepage (J. Am. Medical Informatics Assoc., 2001)

Situated Cooperative Agents: a Powerful Paradigm for MRI Brain Scans Segmentation. - Nathalie Richard; Michel Dojat; Catherine Garbay (ECAI, 2002)

fMRI Retinotopic Mapping - Step by Step. - Jan Warnking; Michel Dojat; Anne Guérin-Dugué; Chantal Delon-Martin; S. Olympieff; Nathalie Richard; Alain Chéhikian; Christoph Segebarth (NeuroImage, 2002)

Multi-agent Approach for Image Processing: A Case Study for MRI Human Brain Scans Interpretation. - Nathalie Richard; Michel Dojat; Catherine Garbay (AIME, 2003)

Rôle des données, informations et connaissances dans la construction de scénarios médicaux. - Anne-Sophie Silvent; Catherine Garbay; Pierre-Yves Carry; Michel Dojat (EGC, 2003)

Statistical Shape Modeling of Unfolded Retinotopic Maps for a Visual Areas Probabilistic Atlas. - Isabelle Corouge; Michel Dojat; Christian Barillot (MICCAI (1), 2003)

SmartCareTM-Automated Clinical Guidelines in Critical Care. - Stefan Mersmann; Michel Dojat (ECAI, 2004)

Artificial intelligence in neuroimaging: four challenges to improve interpretation of brain images. - Michel Dojat (Artif. Intell. Medicine, 2004)

Automated segmentation of human brain MR images using a multi-agent approach. - Nathalie Richard; Michel Dojat; Catherine Garbay (Artif. Intell. Medicine, 2004)

Statistical shape modeling of low level visual area borders. - Isabelle Corouge; Michel Dojat; Christian Barillot (Medical Image Anal., 2004)

Timing of interactions across the visual field in the human cortex. - Simo Vanni; Michel Dojat; Jan Warnking; Chantal Delon-Martin; Christoph Segebarth; J. Bullier (NeuroImage, 2004)

Sequence of pattern onset responses in the human visual areas: an fMRI constrained VEP source analysis. - Simo Vanni; Jan Warnking; Michel Dojat; Chantal Delon-Martin; J. Bullier; Christoph Segebarth (NeuroImage, 2004)

Human/Computer Interaction to Learn Scenarios from ICU Multivariate Time Series. - Thomas Guyet; Catherine Garbay; Michel Dojat (AIME, 2005)

Apprentissage de scénarios à partir de séries temporelles multivariées. - Thomas Guyet; Catherine Garbay; Michel Dojat (EGC, 2005)

Partenariat utilisateur-SMA pour l'apprentissage à partir de séries temporelles : Application au monitoring en soins intensifs (article court). - Thomas Guyet; Catherine Garbay; Michel Dojat (JFSMA, 2005)

Artificial Intelligence in Medicine in Europe AIME'03. - Michel Dojat; Elpida T. Keravnou (Artif. Intell. Medicine, 2005)

Federating Distributed and Heterogeneous Information Sources in Neuroimaging: The NeuroBase Project. - Christian Barillot; Habib Benali; Michel Dojat; Alban Gaignard; Bernard Gibaud; Serge Kinkingnéhun; Jean-Pierre Matsumoto; Mélanie Pélégrini-Issac; Eric Simon; Lynda Temal (HealthGrid, 2006)

A Human-Machine Cooperative Approach for Time Series Data Interpretation. - Thomas Guyet; Catherine Garbay; Michel Dojat (AIME, 2007)

MRF Agent Based Segmentation: Application to MRI Brain Scans. - Benoit Scherrer; Michel Dojat; Florence Forbes; Catherine Garbay (AIME, 2007)

LOCUS: LOcal Cooperative Unified Segmentation of MRI Brain Scans. - Benoit Scherrer; Michel Dojat; Florence Forbes; Catherine Garbay (MICCAI (1), 2007)

Segmentation of Magnetic Resonance Brain Images Using Edge and Region Cooperation Characterization of Stroke Lesions. - Yazid Cherfa; Assia Cherfa; Yacine Kabir; Sammyh Kassous; Assia Jaillard; Michel Dojat; Catherine Garbay (Int. Arab J. Inf. Technol., 2007)

Knowledge construction from time series data using a collaborative exploration system. - Thomas Guyet; Catherine Garbay; Michel Dojat (J. Biomed. Informatics, 2007)

Distributed Markovian segmentation: Application to MR brain scans. - Nathalie Richard; Michel Dojat; Catherine Garbay (Pattern Recognit., 2007)

Towards an ontology for sharing medical images and regions of interest in neuroimaging. - Lynda Temal; Michel Dojat; Gilles Kassel; Bernard Gibaud (J. Biomed. Informatics, 2008)

A Conditional Random Field Approach for Coupling Local Registration with Robust Tissue and Structure Segmentation. - Benoit Scherrer; Florence Forbes; Michel Dojat (MICCAI (1), 2009)

Agentification of Markov model-based segmentation: Application to magnetic resonance brain scans. - Benoit Scherrer; Michel Dojat; Florence Forbes; Catherine Garbay (Artif. Intell. Medicine, 2009)

Distributed Local MRF Models for Tissue and Structure Brain Segmentation. - Benoit Scherrer; Florence Forbes; Catherine Garbay; Michel Dojat (IEEE Trans. Medical Imaging, 2009)

A core ontology of instruments used for neurological, behavioral and cognitive assessments. - Bénédicte Batrancourt; Michel Dojat; Bernard Gibaud; Gilles Kassel (FOIS, 2010)

Grid-wide neuroimaging data federation in the context of the NeuroLOG project. - Franck Michel; Alban Gaignard; Farooq Ahmad; Christian Barillot; Bénédicte Batrancourt; Michel Dojat; Bernard Gibaud; Pascal Girard; David Godard; Gilles Kassel; Diane Lingrand; Grégoire Malandain; et al. (HealthGrid, 2010)

Adaptive weighted fusion of multiple MR sequences for brain lesion segmentation. - Florence Forbes; Senan Doyle; Daniel García-Lorenzo; Christian Barillot; Michel Dojat (ISBI, 2010)

A Weighted Multi-Sequence Markov Model For Brain Lesion Segmentation. - Florence Forbes; Senan Doyle; Daniel García-Lorenzo; Christian Barillot; Michel Dojat (AISTATS, 2010)

Two new stable anatomical landmarks on the Central Sulcus: Definition, automatic detection, and their relationship with primary motor functions of the hand. - Olivier Coulon; Fabrizio Pizzagalli; Grégory Operto; Guillaume Auzias; Chantal Delon-Martin; Michel Dojat (EMBC, 2011)

Combination of nonlinear registration methods with high resolution fMRI for a fine exploration of human primary motor hand area. - Fabrizio Pizzagalli; Guillaume Auzias; Chantal Delon-Martin; Michel Dojat (EMBC, 2011)

Variational Solution to the Joint Detection Estimation of Brain Activity in fMRI. - Lotfi Chaâri; Florence Forbes; Thomas Vincent; Michel Dojat; Philippe Ciuciu (MICCAI (2), 2011)

Adaptive experimental condition selection in event-related fMRI. - Christine Bakhous; Thomas Forbes; Thomas Vincent; Lotfi Chaâri; Michel Dojat; Philippe Ciuciu (ISBI, 2012)

Which registration method for high resolution fMRI to explore hand movement cortical representation? - Fabrizio Pizzagalli; Guillaume Auzias; Chantal Delon-Martin; Michel Dojat (ISBI, 2012)

Use of Pattern-Information Analysis in Vision Science: A Pragmatic Examination. - Mathieu J. Ruiz; Jean-Michel Hupé; Michel Dojat (MLMI, 2012)

A BOLD signature of eyeblinks in the visual cortex. - Jean-Michel Hupé; Cécile Bordier; Michel Dojat (NeuroImage, 2012)

Variational variable selection to assess experimental condition relevance in event-related fMRI. - Christine Bakhous; Florence Forbes; Thomas Vincent; Michel Dojat; Philippe Ciuciu (ISBI, 2013)

Retinotopic and Lateralized Processing of Spatial Frequencies in Human Visual Cortex during Scene Categorization. - Benoit Musel; Cécile Bordier; Michel Dojat; Cédric Pichat; Sylvie Chokron; Jean-François Le Bas; Carole Peyrin (J. Cogn. Neurosci., 2013)

Fast Joint Detection-Estimation of Evoked Brain Activity in Event-Related fMRI Using a Variational Approach. - Lotfi Chaâri; Thomas Vincent; Florence Forbes; Michel Dojat; Philippe Ciuciu (IEEE Trans. Medical Imaging, 2013)

Assessment of Tissue Injury in Severe Brain Trauma. - Christophe Maggia; Senan Doyle; Florence Forbes; Olivier Heck; Irène Troprès; Corentin Berthet; Yann Teyssier; Lionel Velly; Jean-François Payen; Michel Dojat (Brainles@MICCAI, 2015)

A Multilayer Ontology of Instruments for Neurological, Behavioral and Cognitive Assessments. - Bénédicte Batrancourt; Michel Dojat; Bernard Gibaud; Gilles Kassel (Neuroinformatics, 2015)

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). - Bjoern H. Menze; András Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin S. Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth R. Gerstner; et al. (IEEE Trans. Medical Imaging, 2015)

Effects of aging on low luminance contrast processing in humans. - Emmanuelle Bellot; Véronique Coizet; Jan Warnking; Kenneth Knoblauch; Elena Moro; Michel Dojat (NeuroImage, 2016)

Sub-acute and Chronic Ischemic Stroke Lesion MRI Segmentation. - Senan Doyle; Florence Forbes; Assia Jaillard; Olivier Heck; Olivier Detante; Michel Dojat (BrainLes@MICCAI, 2017)

Traumatic Brain Lesion Quantification Based on Mean Diffusivity Changes. - Christophe Maggia; Thomas Mistral; Senan Doyle; Florence Forbes; Alexandre Krainik; Damien Galanaud; Emmanuelle Schmitt; Stéphane Kremer; Irène Troprès; Emmanuel Luc Barbier; Jean-François Payen; Michel Dojat (BrainLes@MICCAI, 2017)

PyHRF: A Python Library for the Analysis of fMRI Data Based on Local Estimation of the Hemodynamic Response Function. - Jaime Arias 001; Philippe Ciuciu; Michel Dojat; Florence Forbes; Aina Frau-Pascual; Thomas Perret; Jan M. Warnking (SciPy, 2017)

Editorial: MAPPING: MAnagement and Processing of Images for Population ImagiNG. - Michel Dojat; David N. Kennedy; Wiro J. Niessen (Frontiers ICT, 2017)

Neural circuits for long-range color filling-in. - Peggy Gerardin; Clément Abbatecola; Frédéric Devinck; Henry Kennedy 002; Michel Dojat; Kenneth Knoblauch (NeuroImage, 2018)

Quantitative Mri Characterization of Brain Abnormalities in DE NOVO Parkinsonian Patients. - Verónica Muñoz Ramírez; Florence Forbes; Julyan Arbel; Alexis Arnaud; Michel Dojat (ISBI, 2019)

No Structural Differences Are Revealed by VBM in 'De Novo' Parkinsonian Patients. - Verónica Muñoz Ramírez; Florence Forbes; Pierrick Coupé; Michel Dojat (MedInfo, 2019)

Deep Learning Models to Study the Early Stages of Parkinson's Disease. - Verónica Muñoz Ramírez; Virgilio Kmetzsch; Florence Forbes; Michel Dojat (ISBI, 2020)

A Multicenter Preclinical MRI Study: Definition of Rat Brain Relaxometry Reference Maps. - Tristan Deruelle; Frank Kober; Adriana Perles-Barbacaru; Thierry Delzescaux; Vincent Noblet; Emmanuel Luc Barbier; Michel Dojat (Frontiers Neuroinformatics, 2020)

Small Animal Shanoir (SAS) A Cloud-Based Solution for Managing Preclinical MR Brain Imaging Studies. - Michaël Kain; Marjolaine Bodin; Simon Loury; Yao Chi; Julien Louis; Mathieu Simon; Julien Lamy; Christian Barillot; Michel Dojat (Frontiers Neuroinformatics, 2020)

Network Embedding For Brain Connectivity. - Lucrezia Carboni; Sophie Achard; Michel Dojat (ISBI, 2021)

Leveraging 3d Information In Unsupervised Brain Mri Segmentation. - Benjamin Lambert; Maxime Louis; Senan Doyle; Florence Forbes; Michel Dojat; Alan Tucholka (ISBI, 2021)

Patch vs. Global Image-Based Unsupervised Anomaly Detection in MR Brain Scans of Early Parkinsonian Patients. - Verónica Muñoz Ramírez; Nicolas Pinon; Florence Forbes; Carole Lartizien; Michel Dojat (MLCN@MICCAI, 2021)

Editorial: APPNING: Animal Population Imaging. - Michel Dojat; Jan G. Bjaalie; Emmanuel Luc Barbier (Frontiers Neuroinformatics, 2021)

Multiple sclerosis lesions segmentation from multiple experts: The MICCAI 2016 challenge dataset. - Olivier Commowick; Michaël Kain; Romain Casey; Roxana Ameli; Jean-Christophe Ferré; Anne Kerbrat; Thomas Tourdias; Frédéric Cervenansky; Sorina Camarasu-Pop; Tristan Glatard; Sandra Vukusic; Gilles Edan; et al. (NeuroImage, 2021)

Beyond Voxel Prediction Uncertainty: Identifying Brain Lesions You Can Trust. - Benjamin Lambert; Florence Forbes; Senan Doyle; Alan Tucholka; Michel Dojat (iMIMIC@MICCAI, 2022)

Subtle anomaly detection: Application to brain MRI analysis of de novo Parkinsonian patients. - Verónica Muñoz Ramírez; Virgilio Kmetzsch; Florence Forbes; Sara Meoni; Elena Moro; Michel Dojat (Artif. Intell. Medicine, 2022)

Trustworthy clinical AI solutions: a unified review of uncertainty quantification in deep learning models for medical image analysis. - Benjamin Lambert; Florence Forbes; Alan Tucholka; Senan Doyle; Harmonie Dehaene; Michel Dojat (CoRR, 2022)

Improving Uncertainty-based Out-of-Distribution Detection for Medical Image Segmentation. - Benjamin Lambert; Florence Forbes; Senan Doyle; Alan Tucholka; Michel Dojat (CoRR, 2022)

Brain Subtle Anomaly Detection Based on Auto-Encoders Latent Space Analysis: Application To De Novo Parkinson Patients. - Nicolas Pinon; Geoffroy Oudoumanessah; Robin Trombetta; Michel Dojat; Florence Forbes; Carole Lartizien (ISBI, 2023)

TriadNet: Sampling-Free Predictive Intervals for Lesional Volume in 3D Brain MR Images. - Benjamin Lambert; Florence Forbes; Senan Doyle; Michel Dojat (UNSURE@MICCAI, 2023)

Multi-layer Aggregation as a Key to Feature-Based OOD Detection. - Benjamin Lambert; Florence Forbes; Senan Doyle; Michel Dojat (UNSURE@MICCAI, 2023)

Anisotropic Hybrid Networks for Liver Tumor Segmentation with Uncertainty Quantification. - Benjamin Lambert; Pauline Roca; Florence Forbes; Senan Doyle; Michel Dojat (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

Towards Frugal Unsupervised Detection of Subtle Abnormalities in Medical Imaging. - Geoffroy Oudoumanessah; Carole Lartizien; Michel Dojat; Florence Forbes (MICCAI (3), 2023)

ImUnity: A generalizable VAE-GAN solution for multicenter MR image harmonization. - Stenzel Cackowski; Emmanuel Luc Barbier; Michel Dojat; Thomas Christen (Medical Image Anal., 2023)

Robust Conformal Volume Estimation in 3D Medical Images. - Benjamin Lambert; Florence Forbes; Senan Doyle; Michel Dojat (MICCAI (10), 2024)

Trustworthy clinical AI solutions: A unified review of uncertainty quantification in Deep Learning models for medical image analysis. - Benjamin Lambert; Florence Forbes; Senan Doyle; Harmonie Dehaene; Michel Dojat (Artif. Intell. Medicine, 2024)

Graph-based methods coupled with specific distributional distances for adversarial attack detection. - Dwight Nwaigwe; Lucrezia Carboni; Martial Mermillod; Sophie Achard; Michel Dojat (Neural Networks, 2024)

Cluster Globally, Reduce Locally: Scalable Efficient Dictionary Compression for Magnetic Resonance Fingerprinting. - Geoffroy Oudoumanessah; Thomas Coudert; Luc Meyer; Aurélien Delphin; Thomas Christen; Michel Dojat; Carole Lartizien; Florence Forbes (ISBI, 2025)

Exploring continual learning strategies in artificial neural networks through graph-based analysis of connectivity: Insights from a brain-inspired perspective. - Lucrezia Carboni; Dwight Nwaigwe; Marion Mainsant; Raphael Bayle; Marina Reyboz; Martial Mermillod; Michel Dojat; Sophie Achard (Neural Networks, 2025)

Active MRI Acquisition with Diffusion Guided Bayesian Experimental Design. - Jacopo Iollo; Geoffroy Oudoumanessah; Carole Lartizien; Michel Dojat; Florence Forbes (CoRR, 2025)