NBLAST: a cluster variant of BLAST for NxN comparisons. - Michel Dumontier; Christopher W. V. Hogue (BMC Bioinform., 2002)

Species-specific protein sequence and fold optimizations. - Michel Dumontier; Katerina Michalickova; Christopher W. V. Hogue (BMC Bioinform., 2002)

SeqHound: biological sequence and structure database as a platform for bioinformatics research. - Katerina Michalickova; Gary D. Bader; Michel Dumontier; Hao Lieu; Doron Betel; Ruth Isserlin; Christopher W. V. Hogue (BMC Bioinform., 2002)

The Biomolecular Interaction Network Database and related tools 2005 update. - C. Alfarano; C. E. Andrade; K. Anthony; N. Bahroos; Martha Bajec; K. Bantoft; Doron Betel; B. Bobechko; K. Boutilier; E. Burgess; K. Buzadzija; R. Cavero; et al. (Nucleic Acids Res., 2005)

Domain-based small molecule binding site annotation. - Kevin A. Snyder; Howard J. Feldman; Michel Dumontier; John J. Salama; Christopher W. V. Hogue (BMC Bioinform., 2006)

Semantic Query Answering with Time-Series Graphs. - Leo Ferres; Michel Dumontier; Natalia Villanueva-Rosales (EDOCW, 2007)

Three-Layer OWL Ontology Design. - Michel Dumontier; Natalia Villanueva-Rosales (WoMO, 2007)

Describing Chemical Functional Groups in OWL-DL for the Classification of Chemical Compounds. - Natalia Villanueva-Rosales; Michel Dumontier (OWLED, 2007)

A stochastic particle-based biological system simulator. - Laurier Boulianne; Michel Dumontier; Warren J. Gross (SCSC, 2007)

SMART: A Web-Based, Ontology-Driven, Semantic Web Query Answering Application. - Alexander De Leon Battista; Natalia Villanueva-Rosales; Myroslav Palenychka; Michel Dumontier (Semantic Web Challenge, 2007)

Chemical Knowledge for the Semantic Web. - Mykola Konyk; Alexander De Leon Battista; Michel Dumontier (DILS, 2008)

Semantic Annotation and Question Answering of Statistical Graphs. - Michel Dumontier; Leo Ferres; Natalia Villanueva-Rosales (MICAI, 2008)

Publishing OWL Ontologies with Presto. - Alex DeLeon; Michel Dumontier (OWLED (Spring), 2008)

Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions. - Michel Dumontier (OWLED, 2008)

Modeling Life Science Knowledge with OWL 1.1. - Michel Dumontier; Natalia Villanueva-Rosales (OWLED (Spring), 2008)

Report on semantic web for health care and life sciences workshop. - Huajun Chen; Kei-Hoi Cheung; Michel Dumontier; Eric Prud'hommeaux; Alan Ruttenberg; Susie Stephens; Yimin Wang (WWW, 2008)

GridCell: a stochastic particle-based biological system simulator. - Laurier Boulianne; Sevin Al Assaad; Michel Dumontier; Warren J. Gross (BMC Syst. Biol., 2008)

yOWL: An ontology-driven knowledge base for yeast biologists. - Natalia Villanueva-Rosales; Michel Dumontier (J. Biomed. Informatics, 2008)

Modeling tryptic digestion on the Cell BE processor. - James R. Green; Hanan Mahmoud; Michel Dumontier (CCECE, 2009)

PDB2RDF - Exposing Molecular and Experimental Knowledge on the Semantic Web. - Jose Cruz-Toledo; Alexander De Leon Battista; Michel Dumontier (I-SEMANTICS, 2009)

A Platform for Reasoning with OWL-EL Knowledge Bases in a Peer-to-Peer Environment. - Alexander De Leon Battista; Michel Dumontier (OWLED, 2009)

Conjunctive Query Answering in Distributed Ontology Systems for Ontologies with Large OWL ABoxes. - Xueying Chen; Michel Dumontier (OWLED, 2009)

Towards pharmacogenomics knowledge discovery with the semantic web. - Michel Dumontier; Natalia Villanueva-Rosales (Briefings Bioinform., 2009)

Realism for scientific ontologies. - Michel Dumontier; Robert Hoehndorf (FOIS, 2010)

Representing Chemicals Using OWL, Description Graphs and Rules. - Janna Hastings; Michel Dumontier; Duncan Hull; Matthew Horridge; Christoph Steinbeck; Robert Stevens 001; Ulrike Sattler; Tertia Hörne; Katarina Britz (OWLED, 2010)

Relational Patterns in OWL and Their Application to OBO. - Robert Hoehndorf; Anika Oellrich; Michel Dumontier; Heinrich Herre; Dietrich Rebholz-Schuhmann (OWLED, 2010)

RKB: a Semantic Web knowledge base for RNA. - Jose Cruz-Toledo; Michel Dumontier; Marc Parisien; François Major (J. Biomed. Semant., 2010)

Relations as patterns: bridging the gap between OBO and OWL. - Robert Hoehndorf; Anika Oellrich; Michel Dumontier; Janet Kelso; Dietrich Rebholz-Schuhmann; Heinrich Herre (BMC Bioinform., 2010)

Building an effective Semantic Web for health care and the life sciences. - Michel Dumontier (Semantic Web, 2010)

Modeling and querying graphical representations of statistical data. - Michel Dumontier; Leo Ferres; Natalia Villanueva-Rosales (J. Web Semant., 2010)

SADI for GMOD: Semantic Web Services for Model Organism Databases. - Benjamin P. Vandervalk; Michel Dumontier; E. Luke McCarthy; Mark D. Wilkinson (CSWS, 2011)

Towards an Interoperable Information Infrastructure Providing Decision Support for Genomic Medicine. - Matthias Samwald; Holger Stenzhorn; Michel Dumontier; M. Scott Marshall; Joanne Luciano; Klaus-Peter Adlassnig (MIE, 2011)

Chemical Hazard Estimation and Method Comparison with OWL-Encoded Toxicity Decision Trees. - Leonid L. Chepelev; Dana Klassen; Michel Dumontier (OWLED, 2011)

The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data. - Robert Hoehndorf; Colin R. Batchelor; Thomas Bittner; Michel Dumontier; Karen Eilbeck; Rob Knight 001; Chris Mungall; Jane S. Richardson; Jesse Stombaugh; Eric Westhof; Craig L. Zirbel; Neocles Leontis (Appl. Ontology, 2011)

A common layer of interoperability for biomedical ontologies based on OWL EL. - Robert Hoehndorf; Michel Dumontier; Anika Oellrich; Sarala M. Wimalaratne; Dietrich Rebholz-Schuhmann; Paul N. Schofield; Georgios V. Gkoutos (Bioinform., 2011)

HyQue: evaluating hypotheses using Semantic Web technologies. - Alison Callahan; Michel Dumontier; Nigam H. Shah (J. Biomed. Semant., 2011)

Integration and publication of heterogeneous text-mined relationships on the Semantic Web. - Adrien Coulet; Yael Garten; Michel Dumontier; Russ B. Altman; Mark A. Musen; Nigam H. Shah (J. Biomed. Semant., 2011)

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. - Joanne S. Luciano; Bosse Andersson; Colin R. Batchelor; Olivier Bodenreider; Tim Clark; Christine K. Denney; Christopher Domarew; Thomas Gambet; Lee Harland; Anja Jentzsch; Vipul Kashyap; Peter J. Kos; et al. (J. Biomed. Semant., 2011)

Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. - Leonid L. Chepelev; Alexandre Riazanov; Alexandre Kouznetsov; Hong Sang Low; Michel Dumontier; Christopher J. O. Baker (BMC Bioinform., 2011)

Integrating systems biology models and biomedical ontologies. - Robert Hoehndorf; Michel Dumontier; John H. Gennari; Sarala M. Wimalaratne; Bernard de Bono; Daniel L. Cook; Georgios V. Gkoutos (BMC Syst. Biol., 2011)

MoSuMo: A Semantic Web service to generate electrostatic potentials across solvent excluded protein surfaces and binding pockets. - Alexander Gawronski; Michel Dumontier (Comput. Graph., 2011)

Semantic Web integration of Cheminformatics resources with the SADI framework. - Leonid L. Chepelev; Michel Dumontier (J. Cheminformatics, 2011)

Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration. - Leonid L. Chepelev; Michel Dumontier (J. Cheminformatics, 2011)

Taking flight with OWL2. - Michel Dumontier (Semantic Web, 2011)

Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation. - Alison Callahan; Michel Dumontier (ESWC, 2012)

Role-based representation and inference of biochemical processes. - Christian Boelling; Michel Dumontier; Michael Weidlich; Hermann-Georg Holzhütter (ICBO, 2012)

Molecular Symmetry and Specialization of Atomic Connectivity by Class-based Reasoning of Chemical Structure. - Michel Dumontier (OWLED, 2012)

Improved Dataset Coverage and Interoperability with Bio2RDF Release 2. - Alison Callahan; Jose Cruz-Toledo; Peter Ansell; Dana Klassen; Giovanni Tumarello; Michel Dumontier (SWAT4LS, 2012)

YummyData: Measuring the "Sparkliness" of Biomedical Sparql Endpoints. - Andrea Splendiani; Johan Nyström-Persson; Michel Dumontier; Yasunori Yamamoto (SWAT4LS, 2012)

Building an HIV data mashup using Bio2RDF. - Marc-Alexandre Nolin; Michel Dumontier; François Belleau; Jacques Corbeil (Briefings Bioinform., 2012)

Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments. - Jose Cruz-Toledo; Maureen McKeague; Xueru Zhang; Amanda Giamberardino; Erin McConnell; Tariq Francis; Maria C. DeRosa; Michel Dumontier (Database J. Biol. Databases Curation, 2012)

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics. - Robert Hoehndorf; Michel Dumontier; Georgios V. Gkoutos (Bioinform., 2012)

Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting. - Larisa N. Soldatova; Susanna-Assunta Sansone; Michel Dumontier; Nigam H. Shah (J. Biomed. Semant., 2012)

Self-organizing ontology of biochemically relevant small molecules. - Leonid L. Chepelev; Janna Hastings; Marcus Ennis; Christoph Steinbeck; Michel Dumontier (BMC Bioinform., 2012)

Towards quantitative measures in applied ontology - Robert Hoehndorf; Michel Dumontier; Georgios V. Gkoutos (CoRR, 2012)

Linked Data in Drug Discovery. - Michel Dumontier; David J. Wild 001 (IEEE Internet Comput., 2012)

Looking into Reactome through Biopax Lens. - Laleh Kazemzadeh; Helena F. Deus; Michel Dumontier; Frank Barry (CSWS, 2013)

Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data. - Alison Callahan; Jose Cruz-Toledo; Peter Ansell; Michel Dumontier (ESWC, 2013)

HyQue: A Semantic Web tool for evaluating scientific hypotheses. - Alison Callahan; Michel Dumontier (ICBO, 2013)

The Web as a Distributed Biochemical Reactor: Semantically Enabled Metabolic Fate Prediction. - Leonid L. Chepelev; Michel Dumontier (ICBO, 2013)

An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. - Matthias Samwald; Robert R. Freimuth; Joanne S. Luciano; Simon M. Lin; Robert L. Powers; M. Scott Marshall; Klaus-Peter Adlassnig; Michel Dumontier; Richard D. Boyce (MedInfo, 2013)

A Large-scale Gene-centric Semantic Web Knowledge Base for Molecular Biology. - Jose Cruz-Toledo; Alison Callahan; Michel Dumontier (ORE, 2013)

Evaluation of research in biomedical ontologies. - Robert Hoehndorf; Michel Dumontier; Georgios V. Gkoutos (Briefings Bioinform., 2013)

Ontology-Based Querying with Bio2RDF's Linked Open Data. - Alison Callahan; Jose Cruz-Toledo; Michel Dumontier (J. Biomed. Semant., 2013)

Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting. - Larisa N. Soldatova; Susanna-Assunta Sansone; Michel Dumontier; Nigam H. Shah (J. Biomed. Semant., 2013)

Ovopub: Modular data publication with minimal provenance - Alison Callahan; Michel Dumontier (CoRR, 2013)

Evaluation of the OQuaRE framework for ontology quality. - Astrid Duque-Ramos; Jesualdo Tomás Fernández-Breis; Miguela Iniesta-Moreno; Michel Dumontier; Mikel Egaña Aranguren; Stefan Schulz 001; Nathalie Aussenac-Gilles; Robert Stevens 001 (Expert Syst. Appl., 2013)

State of the art and open challenges in community-driven knowledge curation. - Tudor Groza; Tania Tudorache; Michel Dumontier (J. Biomed. Informatics, 2013)

1st Semantic Web Technologies for Libraries and Readers (STLR 2011). - Alison Callahan; Michel Dumontier; Jodi Schneider; Lars Svensson (Bull. IEEE Tech. Comm. Digit. Libr., 2013)

Automating Identification of Multiple Chronic Conditions in Clinical Practice Guidelines. - Tiffany I. Leung; Hawre Jalal; Donna M. Zulman; Douglas K. Owens; Mark A. Musen; Michel Dumontier; Mary K. Goldstein (AMIA, 2014)

Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data. - Tobias Kuhn; Michel Dumontier (ESWC, 2014)

Erratum: Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data. - Tobias Kuhn; Michel Dumontier (ESWC, 2014)

A Nanopublication Framework for Biological Networks using Cytoscape.js. - Jamie P. McCusker; Rui Yan 007; Kusum Solanki; John S. Erickson; Cynthia Chang; Michel Dumontier; Jonathan S. Dordick; Deborah L. McGuinness (ICBO, 2014)

Bio2RDF Release 3: A larger, more connected network of Linked Data for the Life Sciences. - Michel Dumontier; Alison Callahan; Jose Cruz-Toledo; Peter Ansell; Vincent Emonet; François Belleau; Arnaud Droit (ISWC (Posters & Demos), 2014)

Mouse model phenotypes provide information about human drug targets. - Robert Hoehndorf; Tanya Hiebert; Nigel W. Hardy; Paul N. Schofield; Georgios V. Gkoutos; Michel Dumontier (Bioinform., 2014)

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. - Michel Dumontier; Christopher J. O. Baker; Joachim Baran; Alison Callahan; Leonid L. Chepelev; Jose Cruz-Toledo; Nicholas R. Del Rio; Geraint Duck; Laura Inés Furlong; Nichealla Keath; Dana Klassen; Jamie P. McCusker; et al. (J. Biomed. Semant., 2014)

Automatically exposing OpenLifeData via SADI semantic Web Services. - Alejandro Rodríguez González; Alison Callahan; José Cruz-Toledo; Adrian Garcia; Mikel Egaña Aranguren; Michel Dumontier; Mark D. Wilkinson (J. Biomed. Semant., 2014)

Selected papers from the 16th Annual Bio-Ontologies Special Interest Group Meeting. - Larisa N. Soldatova; Philippe Rocca-Serra; Michel Dumontier; Nigam H. Shah (J. Biomed. Semant., 2014)

Hash-URIs for Verifiable, Immutable, and Permanent Digital Artifacts. - Tobias Kuhn; Michel Dumontier (CoRR, 2014)

Special issue on Linked Data for Health Care and the Life Sciences. - Mikel Egaña Aranguren; Jesualdo Tomás Fernández-Breis; Michel Dumontier (Semantic Web, 2014)

Drug-Disease Associations in Guidelines, Drug Labels, and Practice. - Tiffany I. Leung; Michel Dumontier (AMIA, 2015)

A Preliminary Investigation into SPARQL Query Complexity and Federation in Bio2RDF. - Carlos Buil-Aranda; Martín Ugarte; Marcelo Arenas; Michel Dumontier (AMW, 2015)

Comparing Drug-Disease Associations in Clinical Practice Guideline Recommendations and Drug Product Label Indications. - Tiffany I. Leung; Michel Dumontier (MedInfo, 2015)

Provenance-Centered Dataset of Drug-Drug Interactions. - Juan M. Banda; Tobias Kuhn; Nigam H. Shah; Michel Dumontier (ISWC (2), 2015)

Link Analysis of Life Science Linked Data. - Wei Hu 007; Honglei Qiu; Michel Dumontier (ISWC (2), 2015)

Publishing Without Publishers: A Decentralized Approach to Dissemination, Retrieval, and Archiving of Data. - Tobias Kuhn; Christine Chichester; Michael Krauthammer; Michel Dumontier (ISWC (1), 2015)

Exposing Provenance Metadata Using Different RDF Models. - Gang Fu; Evan Bolton; Núria Queralt-Rosinach; Laura Inés Furlong; Vinh Nguyen; Amit P. Sheth; Olivier Bodenreider; Michel Dumontier (SWAT4LS, 2015)

An Ebola virus-centered knowledge base. - Maulik R. Kamdar; Michel Dumontier (Database J. Biol. Databases Curation, 2015)

SPARQL-enabled identifier conversion with Identifiers.org. - Sarala M. Wimalaratne; Jerven T. Bolleman; Nick S. Juty; Toshiaki Katayama; Michel Dumontier; Nicole Redaschi; Nicolas Le Novère; Henning Hermjakob; Camille Laibe (Bioinform., 2015)

Special issue on bio-ontologies and phenotypes. - Larisa N. Soldatova; Nigel Collier; Anika Oellrich; Tudor Groza; Karin Verspoor; Philippe Rocca-Serra; Michel Dumontier; Nigam H. Shah (J. Biomed. Semant., 2015)

An evidence-based approach to identify aging-related genes in Caenorhabditis elegans. - Alison Callahan; Juan Cifuentes; Michel Dumontier (BMC Bioinform., 2015)

On Reasoning with RDF Statements about Statements using Singleton Property Triples. - Vinh Nguyen; Olivier Bodenreider; Krishnaprasad Thirunarayan; Gang Fu; Evan Bolton; Núria Queralt Rosinach; Laura Inés Furlong; Michel Dumontier; Amit P. Sheth (CoRR, 2015)

The center for expanded data annotation and retrieval. - Mark A. Musen; Carol A. Bean; Kei-Hoi Cheung; Michel Dumontier; Kim A. Durante; Olivier Gevaert; Alejandra N. González-Beltrán; Purvesh Khatri; Steven H. Kleinstein; Martin J. O'Connor; Yannick Pouliot; Philippe Rocca-Serra; et al. (J. Am. Medical Informatics Assoc., 2015)

Toward a complete dataset of drug-drug interaction information from publicly available sources. - Serkan Ayvaz; John R. Horn; Oktie Hassanzadeh; Qian Zhu 003; Johann Stan; Nicholas P. Tatonetti; Santiago Vilar; Mathias Brochhausen; Matthias Samwald; Majid Rastegar-Mojarad; Michel Dumontier; Richard D. Boyce (J. Biomed. Informatics, 2015)

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. - Gang Fu; Colin R. Batchelor; Michel Dumontier; Janna Hastings; Egon L. Willighagen; Evan Bolton (J. Cheminformatics, 2015)

Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. - Matthias Samwald; José Antonio Miñarro-Giménez; Richard D. Boyce; Robert R. Freimuth; Klaus-Peter Adlassnig; Michel Dumontier (BMC Medical Informatics Decis. Mak., 2015)

Achieving human and machine accessibility of cited data in scholarly publications. - Joan Starr; Eleni Castro; Mercè Crosas; Michel Dumontier; Robert R. Downs; Ruth E. Duerr; Laurel L. Haak; Melissa A. Haendel; Iván Herman; Simon Hodson; Joe Hourclé; John Ernest Kratz; et al. (PeerJ Prepr., 2015)

Making Digital Artifacts on the Web Verifiable and Reliable. - Tobias Kuhn; Michel Dumontier (IEEE Trans. Knowl. Data Eng., 2015)

Using LASSO Regression to Predict Rheumatoid Arthritis Treatment Efficacy. - David J. Odgers; Natalie Telis; Heather Hall; Michel Dumontier (CRI, 2016)

Network Ranking Assisted Semantic Data Mining. - Jan Kralj; Anze Vavpetic; Michel Dumontier; Nada Lavrac (IWBBIO, 2016)

Semantic Research Platform for Model Organisms. - Maxime Déraspe; Kalpana Karra; Gail Binkley; Julie M. Sullivan; Gos Micklem; Jacques Corbeil; J. Michael Cherry; Michel Dumontier (BMDID@ISWC, 2016)

Ontology Mapping for Life Science Linked Data. - Amrapali Zaveri; Michel Dumontier (BMDID@ISWC, 2016)

Making Linked Data SPARQL with the InterMine Biological Data Warehouse. - Maxime Déraspe; Gail Binkley; Daniela Butano; Matthew Chadwick; J. Michael Cherry; Justin Clark-Casey; Sergio Contrino; Jacques Corbeil; Joshua Heimbach; Kalpana Karra; Rachel Lyne; Julie M. Sullivan; et al. (SWAT4LS, 2016)

The digital revolution in phenotyping. - Anika Oellrich; Nigel Collier; Tudor Groza; Dietrich Rebholz-Schuhmann; Nigam Shah; Olivier Bodenreider; Mary Regina Boland; Ivo I. Georgiev; Hongfang Liu; Kevin M. Livingston; Augustin Luna; Ann-Marie Mallon; et al. (Briefings Bioinform., 2016)

Predicting structured metadata from unstructured metadata. - Lisa Posch; Maryam Panahiazar; Michel Dumontier; Olivier Gevaert (Database J. Biol. Databases Curation, 2016)

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. - Jerven T. Bolleman; Christopher J. Mungall; Francesco Strozzi; Joachim Baran; Michel Dumontier; Raoul Jean Pierre Bonnal; Robert M. Buels; Robert Hoehndorf; Takatomo Fujisawa; Toshiaki Katayama; Peter J. A. Cock (J. Biomed. Semant., 2016)

Overlap in drug-disease associations between clinical practice guidelines and drug structured product label indications. - Tiffany I. Leung; Michel Dumontier (J. Biomed. Semant., 2016)

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. - Karin Verspoor; Anika Oellrich; Nigel Collier; Tudor Groza; Philippe Rocca-Serra; Larisa N. Soldatova; Michel Dumontier; Nigam Shah (J. Biomed. Semant., 2016)

The structure and dynamics of the research fronts in HIV/AIDS research: part-whole and adaptive specialization. - David Fajardo-Ortiz; Malaquias Lopez-Cervantes; Luis Duran; Michel Dumontier; Miguel Lara; Hector Ochoa; Víctor M. Castaño (CoRR, 2016)

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. - Jonathan M. Mortensen; Natalie Telis; Jacob J. Hughey; Hua Fan-Minogue; Kimberly Van Auken; Michel Dumontier; Mark A. Musen (J. Biomed. Informatics, 2016)

Decentralized provenance-aware publishing with nanopublications. - Tobias Kuhn; Christine Chichester; Michael Krauthammer; Núria Queralt-Rosinach; Ruben Verborgh; George Giannakopoulos; Axel-Cyrille Ngonga Ngomo; Raffaele Viglianti; Michel Dumontier (PeerJ Prepr., 2016)

Finding melanoma drugs through a probabilistic knowledge graph. - Jamie P. McCusker; Michel Dumontier; Rui Yan 007; Sylvia He; Jonathan S. Dordick; Deborah L. McGuinness (PeerJ Prepr., 2016)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Mark Thompson 002; Rajaram Kaliyaperumal; et al. (PeerJ Prepr., 2016)

Publishing DisGeNET as nanopublications. - Núria Queralt-Rosinach; Tobias Kuhn; Christine Chichester; Michel Dumontier; Ferran Sanz; Laura I. Furlong (Semantic Web, 2016)

Is Crowdsourcing Patient-Reported Outcomes the Future of Evidence-Based Medicine? A Case Study of Back Pain. - Mor Peleg; Tiffany I. Leung; Manisha Desai; Michel Dumontier (AIME, 2017)

smartAPI: Towards a More Intelligent Network of Web APIs. - Amrapali Zaveri; Shima Dastgheib; Chunlei Wu; Trish Whetzel; Ruben Verborgh; Paul Avillach; Gabor Korodi; Raymond Terryn; Kathleen M. Jagodnik; Pedro Assis; Michel Dumontier (ESWC (2), 2017)

The SmartAPI Ecosystem for Making Web APIs FAIR. - Shima Dastgheib; Trish Whetzel; Amrapali Zaveri; Cyrus Afrasiabi; Pedro Assis; Paul Avillach; Kathleen M. Jagodnik; Gabor Korodi; Marcin Pilarczyk; Jeff de Pons; Stephan C. Schürer; Raymond Terryn; et al. (ISWC (Posters, Demos & Industry Tracks), 2017)

Bioschemas: schema.org for the Life Sciences. - Leyla J. García; Olga L. Giraldo; Alexander García Castro; Michel Dumontier; Bioschemas Community (SWAT4LS, 2017)

Machine Learning Based Drug Indication Prediction Using Linked Open Data. - Remzi Çelebi; Özgün Erten; Michel Dumontier (SWAT4LS, 2017)

BioSearch: a semantic search engine for Bio2RDF. - Wei Hu 007; Honglei Qiu; Jiacheng Huang 001; Michel Dumontier (Database J. Biol. Databases Curation, 2017)

Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. - Richard D. Boyce; Erica A. Voss; Vojtech Huser; Lee Evans; Christian G. Reich; Jon D. Duke; Nicholas P. Tatonetti; Tal Lorberbaum; Michel Dumontier; Manfred Hauben; Magnus Wallberg; Lili Peng; et al. (J. Biomed. Semant., 2017)

Discovering associations between adverse drug events using pattern structures and ontologies. - Gabin Personeni; Emmanuel Bresso; Marie-Dominique Devignes; Michel Dumontier; Malika Smaïl-Tabbone; Adrien Coulet (J. Biomed. Semant., 2017)

Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata. - Wei Hu 007; Amrapali Zaveri; Honglei Qiu; Michel Dumontier (BMC Bioinform., 2017)

Data Science - Methods, infrastructure, and applications. - Michel Dumontier; Tobias Kuhn (Data Sci., 2017)

Genuine semantic publishing. - Tobias Kuhn; Michel Dumontier (Data Sci., 2017)

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud. - Barend Mons; Cameron Neylon; Jan Velterop; Michel Dumontier; Luiz Olavo Bonino da Silva Santos; Mark D. Wilkinson (Inf. Serv. Use, 2017)

Formalizing drug indications on the road to therapeutic intent. - Stuart J. Nelson; Tudor I. Oprea; Oleg Ursu; Cristian Bologa; Amrapali Zaveri; Jayme Holmes; Jeremy J. Yang; Stephen L. Mathias; Subramani Mani; Mark S. Tuttle; Michel Dumontier (J. Am. Medical Informatics Assoc., 2017)

Drug-drug interaction discovery and demystification using Semantic Web technologies. - Adeeb Noor; Abdullah Assiri; Serkan Ayvaz; Connor Clark; Michel Dumontier (J. Am. Medical Informatics Assoc., 2017)

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. - Kathleen M. Jagodnik; Simon Koplev; Sherry L. Jenkins; Lucila Ohno-Machado; Benedict Paten; Stephan C. Schürer; Michel Dumontier; Ruben Verborgh; Alex A. T. Bui; Peipei Ping; Neil J. McKenna; Ravi K. Madduri; et al. (J. Biomed. Informatics, 2017)

Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). - Maryam Panahiazar; Michel Dumontier; Olivier Gevaert (J. Biomed. Informatics, 2017)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Arnold Kuzniar; Anand K. Gavai; et al. (PeerJ Prepr., 2017)

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. - Tobias Kuhn; Albert Meroño-Peñuela; Alexander Malic; Jorrit H. Poelen; Allen H. Hurlbert; Emilio Centeno Ortiz; Laura I. Furlong; Núria Queralt-Rosinach; Christine Chichester; Juan M. Banda; Egon L. Willighagen; Friederike Ehrhart; et al. (eScience, 2018)

Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data. - Johan van Soest; Chang Sun 001; Ole Mussmann; Marco Puts; Bob van den Berg; Alexander Malic; Claudia van Oppen; David Townend; Andre Dekker; Michel Dumontier (MIE, 2018)

Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction using Linked Open Data. - Remzi Çelebi; Erkan Yasar; Hüseyin Uyar; Özgür Gümüs; Oguz Dikenelli; Michel Dumontier (SWAT4LS, 2018)

Data2Services: enabling automated conversion of data to services. - Vincent Emonet; Amrapali Zaveri; Alexander Malic; Andreea Grigoriu; Michel Dumontier (SWAT4LS, 2018)

Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. - Maxat Kulmanov; Senay Kafkas; Andreas Karwath; Alexander Malic; Georgios V. Gkoutos; Michel Dumontier; Robert Hoehndorf (SWAT4LS, 2018)

A model for capturing provenance of assertions about chemical substances. - Kody Moodley; Amrapali Zaveri; Chunlei Wu; Michel Dumontier (SWAT4LS, 2018)

CrowdED: Guideline for Optimal Crowdsourcing Experimental Design. - Amrapali Zaveri; Pedro Hernandez Serrano; Manisha Desai; Michel Dumontier (WWW (Companion Volume), 2018)

Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths. - Yijia Zhang 001; Wei Zheng 003; Hongfei Lin; Jian Wang 021; Zhihao Yang; Michel Dumontier (Bioinform., 2018)

Analyzing Partitioned FAIR Health Data Responsibly. - Chang Sun 001; Lianne Ippel; Birgit Wouters; Johan van Soest; Alexander Malic; Onaopepo Adekunle; Bob van den Berg; Marco Puts; Ole Mussmann; Annemarie Koster; Carla van der Kallen; David Townend; et al. (CoRR, 2018)

A Web API Ecosystem through Feature-Based Reuse. - Ruben Verborgh; Michel Dumontier (IEEE Internet Comput., 2018)

Finding the evidence base using citation networks: Do 300 to 400 U.S. physicians die by suicide annually? - Tiffany I. Leung; Sima Pendharkar; Chwen-Yuen Angie Chen; Michel Dumontier (AMIA, 2019)

Similarity and Relevance of Court Decisions: A Computational Study on CJEU Cases. - Kody Moodley; Pedro V. Hernandez Serrano; Gijs van Dijck; Michel Dumontier (JURIX, 2019)

FAIR Principles for Clinical Practice Guidelines in a Learning Health System. - Tiffany I. Leung; Michel Dumontier (MedInfo, 2019)

A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario. - Chang Sun 001; Lianne Ippel; Johan van Soest; Birgit Wouters; Alexander Malic; Onaopepo Adekunle; Bob van den Berg; Ole Mussmann; Annemarie Koster; Carla van der Kallen; Claudia van Oppen; David Townend; et al. (MedInfo, 2019)

A Linked Data Representation for Summary Statistics and Grouping Criteria. - Jamie P. McCusker; Michel Dumontier; Shruthi Chari; Joanne S. Luciano; Deborah L. McGuinness (SAWSemStats@ISWC, 2019)

Reflections on: Finding Melanoma Drugs Through a Probabilistic Knowledge Graph. - Jamie P. McCusker; Michel Dumontier; Rui Yan 007; Sylvia He; Jonathan S. Dordick; Deborah L. McGuinness (JT@ISWC, 2019)

Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR. - Johan van Soest; Ananya Choudhury; Nikhil Gaikwad; Matthijs Sloep; Michel Dumontier; Andre Dekker (SWAT4HCLS, 2019)

Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure. - Chang Sun 001; Vincent Emonet; Johan van Soest; Annemarie Koster; Andre Dekker; Michel Dumontier (SWAT4HCLS, 2019)

GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures. - Shengtian Sang; Zhihao Yang; Xiaoxia Liu; Lei Wang 085; Hongfei Lin; Jian Wang 021; Michel Dumontier (IEEE Access, 2019)

Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings. - Remzi Celebi; Hüseyin Uyar; Erkan Yasar; Özgür Gümüs; Oguz Dikenelli; Michel Dumontier (BMC Bioinform., 2019)

LUCE: A Blockchain Solution for monitoring data License accoUntability and CompliancE. - Nadine Havelange; Michel Dumontier; Birgit Wouters; Jona Linde; David Townend; Arno Riedl; Visara Urovi (CoRR, 2019)

Privacy-Preserving Generalized Linear Models using Distributed Block Coordinate Descent. - Erik-Jan van Kesteren; Chang Sun 001; Daniel L. Oberski; Michel Dumontier; Lianne Ippel (CoRR, 2019)

Towards FAIR protocols and workflows: The OpenPREDICT case study. - Remzi Celebi; Joao Rebelo Moreira; Ahmed A. Hassan; Sandeep Ayyar; Lars Ridder; Tobias Kuhn; Michel Dumontier (CoRR, 2019)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

MetaCrowd: Crowdsourcing Biomedical Metadata Quality Assessment. - Amrapali Zaveri; Wei Hu 007; Michel Dumontier (Hum. Comput., 2019)

Accelerating Discovery Science with an Internet of FAIR Data and Services. - Michel Dumontier (CIKM, 2020)

Sleeping Beauties in Case Law. - Pedro V. Hernandez Serrano; Kody Moodley; Gijs van Dijck; Michel Dumontier (JURIX, 2020)

Blockchain for Privacy Preserving and Trustworthy Distributed Machine Learning in Multicentric Medical Imaging (C-DistriM). - Fadila Zerka; Visara Urovi; Akshayaa Vaidyanathan; Samir Barakat; Ralph T. H. Leijenaar; Sean Walsh 004; Hanif Gabrani-Juma; Benjamin Miraglio; Henry C. Woodruff; Michel Dumontier; Philippe Lambin (IEEE Access, 2020)

Knowledge Graphs Evolution and Preservation - A Technical Report from ISWS 2019. - Nacira Abbas; Kholoud Alghamdi; Mortaza Alinam; Francesca Alloatti; Glenda C. M. Amaral; Claudia d'Amato; Luigi Asprino; Martin Beno; Felix Bensmann; Russa Biswas; Ling Cai; Riley Capshaw; et al. (CoRR, 2020)

Introduction - FAIR data, systems and analysis. - Paul Groth; Michel Dumontier (Data Sci., 2020)

Considerations for the Conduction and Interpretation of FAIRness Evaluations. - Ricardo de Miranda Azevedo; Michel Dumontier (Data Intell., 2020)

Distributed Analytics on Sensitive Medical Data: The Personal Health Train. - Oya Beyan; Ananya Choudhury; Johan van Soest; Oliver Kohlbacher; Lukas Zimmermann; Holger Stenzhorn; Md. Rezaul Karim 001; Michel Dumontier; Stefan Decker; Luiz Olavo Bonino da Silva Santos; Andre Dekker (Data Intell., 2020)

FAIR Principles: Interpretations and Implementation Considerations. - Annika Jacobsen; Ricardo de Miranda Azevedo; Nick S. Juty; Dominique Batista; Simon J. Coles; Ronald Cornet; Mélanie Courtot; Mercè Crosas; Michel Dumontier; Chris T. A. Evelo; Carole A. Goble; Giancarlo Guizzardi; et al. (Data Intell., 2020)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)

Towards FAIR protocols and workflows: the OpenPREDICT use case. - Remzi Celebi; Joao Rebelo Moreira; Ahmed A. Hassan; Sandeep Ayyar; Lars Ridder; Tobias Kuhn; Michel Dumontier (PeerJ Comput. Sci., 2020)

Ten simple rules for making training materials FAIR. - Leyla J. García; Bérénice Batut; Melissa L. Burke; Mateusz Kuzak; Fotis E. Psomopoulos; Ricardo Arcila; Teresa K. Attwood; Niall Beard; Denise Carvalho-Silva; Alexandros C. Dimopoulos; Victoria Dominguez Del Angel; Michel Dumontier; et al. (PLoS Comput. Biol., 2020)

Reuse of Design Pattern Measurements for Health Data. - Núria Queralt-Rosinach; Mark D. Wilkinson; Rajaram Kaliyaperumal; César Henrique Bernabé; Qinqin Long; Michel Dumontier; Paul N. Schofield; Marco Roos (JOWO, 2021)

User-friendly Composition of FAIR Workflows in a Notebook Environment. - Robin A. Richardson; Remzi Celebi; Sven van der Burg; Djura Smits; Lars Ridder; Michel Dumontier; Tobias Kuhn (K-CAP, 2021)

Knowledge Graph Completeness: A Systematic Literature Review. - Subhi Issa; Onaopepo Adekunle; Fayçal Hamdi 001; Samira Si-Said Cherfi; Michel Dumontier; Amrapali Zaveri (IEEE Access, 2021)

SIENA: Semi-automatic semantic enhancement of datasets using concept recognition. - Andreea Grigoriu; Amrapali Zaveri; Gerhard Weiss 001; Michel Dumontier (J. Biomed. Semant., 2021)

InContext: curation of medical context for drug indications. - Kody Moodley; Linda Rieswijk; Tudor I. Oprea; Michel Dumontier (J. Biomed. Semant., 2021)

Privacy preserving distributed learning classifiers - Sequential learning with small sets of data. - Fadila Zerka; Visara Urovi; Fabio Bottari; Ralph T. H. Leijenaar; Sean Walsh 004; Hanif Gabrani-Juma; Martin Gueuning; Akshayaa Vaidyanathan; Wim Vos; Mariaelena Occhipinti; Henry C. Woodruff; Michel Dumontier; et al. (Comput. Biol. Medicine, 2021)

A systematic review on privacy-preserving distributed data mining. - Chang Sun 001; Lianne Ippel; Andre Dekker; Michel Dumontier; Johan van Soest (Data Sci., 2021)

Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines. - Krist Shingjergji; Remzi Celebi; Jan C. Scholtes; Michel Dumontier (J. Biomed. Informatics, 2021)

Experience: Automated Prediction of Experimental Metadata from Scientific Publications. - Stuti Nayak; Amrapali Zaveri; Pedro Hernandez Serrano; Michel Dumontier (ACM J. Data Inf. Qual., 2021)

Semantic micro-contributions with decentralized nanopublication services. - Tobias Kuhn; Ruben Taelman; Vincent Emonet; Haris Antonatos; Stian Soiland-Reyes; Michel Dumontier (PeerJ Comput. Sci., 2021)

Comparison results of FAIR Evaluation tools. - Chang Sun 001; Vincent Emonet; Michel Dumontier (Zenodo, 2021)

Semantic Correlation Graph Embedding. - Weiwei Wang; Yuchen Han; Stefano Bromuri; Michel Dumontier (FUZZ-IEEE, 2022)

Nanotate: Semantically Annotating Experimental Protocols with Nanopublications. - Olga L. Giraldo; Miguel Ruano; Robin A. Richardson; Remzi Celebi; Michel Dumontier; Tobias Kuhn (SWAT4HCLS, 2022)

Automated Identification of Food Substitutions Using Knowledge Graph Embeddings. - Julie Loesch; Louis Meeckers; Ilse van Lier; Alie de Boer; Michel Dumontier; Remzi Celebi (SWAT4HCLS, 2022)

A Comprehensive Comparison of Automated FAIRness Evaluation Tools. - Chang Sun 001; Vincent Emonet; Michel Dumontier (SWAT4HCLS, 2022)

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. - Rajaram Kaliyaperumal; Mark D. Wilkinson; Pablo Alarcón Moreno; Nirupama Benis; Ronald Cornet; Bruna dos Santos Vieira; Michel Dumontier; César Henrique Bernabé; Annika Jacobsen; Clémence M. A. Le Cornec; Mario Prieto Godoy; Núria Queralt-Rosinach; et al. (J. Biomed. Semant., 2022)

LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance. - Visara Urovi; Vikas Jaiman; Arno Angerer; Michel Dumontier (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science. - Deepak R. Unni; Sierra A. T. Moxon; Michael Bada; Matthew H. Brush; Richard M. Bruskiewich; Paul A. Clemons; Vlado Dancík; Michel Dumontier; Karamarie Fecho; Gustavo Glusman; Jennifer J. Hadlock; Nomi L. Harris; et al. (CoRR, 2022)

Improving Correlation Capture in Generating Imbalanced Data using Differentially Private Conditional GANs. - Chang Sun 001; Johan van Soest; Michel Dumontier (CoRR, 2022)

A formalization of one of the main claims of "The FAIR Guiding Principles for scientific data management and stewardship" by Wilkinson et al. 20161. - Michel Dumontier (Data Sci., 2022)

Studying the association of diabetes and healthcare cost on distributed data from the Maastricht Study and Statistics Netherlands using a privacy-preserving federated learning infrastructure. - Chang Sun 001; Johan van Soest; Annemarie Koster; Simone J. P. M. Eussen; Miranda T. Schram; Coen D. A. Stehouwer; Pieter C. Dagnelie; Michel Dumontier (J. Biomed. Informatics, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Graph-based Categorical Embedding. - Weiwei Wang; Stefano Bromuri; Michel Dumontier (ESANN, 2023)

On the Combination of Event Calculus and Empirical Semantic Drifts. - Franz Krause; Xi Yan; Baptiste Darnala; Michel Dumontier (ESWC Workshops, 2023)

ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. - Gijs Wijngaard; Elia Formisano; Bruno L. Giordano; Michel Dumontier (EUSIPCO, 2023)

Semantically-Informed Deep Neural Networks For Sound Recognition. - Michele Esposito; Giancarlo Valente; Yenisel Plasencia Calaña; Michel Dumontier; Bruno L. Giordano; Elia Formisano (ICASSP, 2023)

Enhanced GAT: Expanding Receptive Field with Meta Path-Guided RDF Rules for Two-Hop Connectivity. - Julie Loesch; Michel Dumontier; Remzi Celebi (QALD/SemREC@ISWC, 2023)

Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated Learning. - Chang Sun 001; Johan van Soest; Michel Dumontier (SWAT4HCLS, 2023)

Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions. - Elif Ozkan; Remzi Celebi; Arif Yilmaz; Vincent Emonet; Michel Dumontier (SWAT4HCLS, 2023)

Evidence From Data Science on the Relationship Between Individual Beliefs/Behaviors Survey During COVID-19 Pandemic and Risk Preference. - Onaopepo Adekunle; Arno Riedl; Michel Dumontier (Adv. Artif. Intell. Mach. Learn., 2023)

TAPS Responsibility Matrix: A tool for responsible data science by design. - Visara Urovi; Remzi Celebi; Chang Sun 001; Linda Rieswijk; Michael Erard; Arif Yilmaz; Kody Moodley; Parveen Kumar; Michel Dumontier (CoRR, 2023)

FAIR Begins at home: Implementing FAIR via the Community Data Driven Insights. - Carlos Utrilla Guerrero; Maria Vivas Romero; Marc Dolman; Michel Dumontier (CoRR, 2023)

Models towards Risk Behavior Prediction and Analysis: A Netherlands Case study. - Onaopepo Adekunle; Arno Riedl; Michel Dumontier (CoRR, 2023)

Generating synthetic personal health data using conditional generative adversarial networks combining with differential privacy. - Chang Sun 001; Johan van Soest; Michel Dumontier (J. Biomed. Informatics, 2023)

ciTIzen-centric DAta pLatform (TIDAL): Sharing distributed personal data in a privacy-preserving manner for health research. - Chang Sun 001; Marc Gallofré Ocaña; Johan van Soest; Michel Dumontier (Semantic Web, 2023)

Towards Biomedical Neurosymbolic AI: From Knowledge Infrastructure to Explainable Predictions. - Michel Dumontier (SeWeBMeDA@ESWC, 2024)

Exploring the role of generative AI in constructing knowledge graphs for drug indications with medical context. - Reham Alharbi; Umair Ahmed; Daniil Dobriy; Weronika Lajewska; Laura Menotti; Mohammad Javad Saeedizade; Michel Dumontier (SWAT4HCLS, 2024)

Construction of a knowledge graph for food health claims. - Remzi Celebi; Ilse van Lier; Alie de Boer; Michel Dumontier (SWAT4HCLS, 2024)

Explaining Graph Neural Network predictions for drug repurposing. - Julie Loesch; Yang Yang; Pelinsu Ekmekci; Michel Dumontier; Remzi Celebi (SWAT4HCLS, 2024)

Analyzing SPARQL query logs: A study on schema coverage and query content. - Maryam Mohammadi; Michel Dumontier (SWAT4HCLS, 2024)

Improving rule mining via embedding-based link prediction. - N'Dah Jean Kouagou; Arif Yilmaz; Michel Dumontier; Axel-Cyrille Ngonga Ngomo (CoRR, 2024)

Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges. - Mahmoud Ibrahim; Yasmina Al Khalil; Sina Amirrajab; Chang Sun 001; Marcel Breeuwer; Josien P. W. Pluim; Bart Elen; Gökhan Ertaylan; Michel Dumontier (CoRR, 2024)

CrowdED 1.0: Statistical Guideline for Designing Optimal Crowdsourcing Experiments. - Amrapali Zaveri; Pedro V. Hernandez Serrano; Michel Dumontier (Hum. Comput., 2024)

Editorial of the special issue on semantic technologies for data and algorithmic governance. - Sabrina Kirrane; Oshani Seneviratne; Michel Dumontier (Semantic Web, 2024)

LSQ 2.0: A linked dataset of SPARQL query logs. - Claus Stadler; Muhammad Saleem 002; Qaiser Mehmood 001; Carlos Buil-Aranda; Michel Dumontier; Aidan Hogan; Axel-Cyrille Ngonga Ngomo (Semantic Web, 2024)

Towards biomedical neurosymbolic AI: From semantic knowledge infrastructure to explainable predictions. - Michel Dumontier (EGC, 2025)

Using Clinical Guidelines, Domain Ontology, and LLMs for Personalized Leukemia Treatment Recommendations. - Xingru Xu; Michel Dumontier; Chang Sun 001 (SeWeBMeDA@ESWC, 2025)

Audio-Language Datasets of Scenes and Events: A Survey. - Gijs Wijngaard; Elia Formisano; Michele Esposito; Michel Dumontier (IEEE Access, 2025)

CDE-Mapper: Using retrieval-augmented language models for linking clinical data elements to controlled vocabularies. - Komal Gilani; Marlo Verket; Christof Peters; Michel Dumontier; Hans-Peter Brunner-La Rocca; Visara Urovi (Comput. Biol. Medicine, 2025)

Generative AI for synthetic data across multiple medical modalities: A systematic review of recent developments and challenges. - Mahmoud K. Ibrahim; Yasmina Al Khalil; Sina Amirrajab; Chang Sun 001; Marcel Breeuwer; Josien P. W. Pluim; Bart Elen; Gökhan Ertaylan; Michel Dumontier (Comput. Biol. Medicine, 2025)

Generating unseen diseases patient data using ontology enhanced generative adversarial networks. - Chang Sun 001; Michel Dumontier (npj Digit. Medicine, 2025)

Semantic Web and Creative AI - A Technical Report from ISWS 2023. - Raia Abu Ahmad; Reham Alharbi; Roberto Barile; Martin Böckling; Francisco Bolanos; Sara Bonfitto; Oleksandra Bruns; Irene Celino; Yashrajsinh Chudasama; Martin Critelli; Claudia d'Amato; Giada D'Ippolito; et al. (CoRR, 2025)

AudSemThinker: Enhancing Audio-Language Models through Reasoning over Semantics of Sound. - Gijs Wijngaard; Elia Formisano; Michele Esposito; Michel Dumontier (CoRR, 2025)

Adapting Lightweight Vision Language Models for Radiological Visual Question Answering. - Aditya Shourya; Michel Dumontier; Chang Sun 001 (CoRR, 2025)

Data-Balanced Curriculum Learning for Audio Question Answering. - Gijs Wijngaard; Elia Formisano; Michele Esposito; Michel Dumontier (CoRR, 2025)