GEOM: A new tool for molecular modelling based on distance geometry calculations with NMR data. - Michel F. Sanner; Armin Widmer; Hans Senn; Werner Braun (J. Comput. Aided Mol. Des., 1989)

Fast and Robust Computation of Molecular Surfaces. - Michel F. Sanner; Arthur J. Olson; Jean-Claude Spehner (SCG, 1995)

Lattice modeling: Accuracy of energy calculations. - Boris A. Reva; Michel F. Sanner; Arthur J. Olson; Alexei V. Finkelstein (J. Comput. Chem., 1996)

Integrating Computation and Visualization for Biomolecular Analysis: An Example Using Python and AVS. - Michel F. Sanner; Bruce S. Duncan; C. J. Carrillo; Arthur J. Olson (Pacific Symposium on Biocomputing, 1999)

Role of Haptics in Teaching Structural Molecular Biolog. - Ganesh Sankaranarayanan; Suzanne Weghorst; Michel F. Sanner; Alexandre Gillet; Arthur J. Olson (HAPTICS, 2003)

Integrating Biomolecular Analysis and Visual Programming: Flexibility and Interactivity in the Design of Bioinformatics Tools. - Daniel Stoffler; Sophie I. Coon; Ruth Huey; Arthur J. Olson; Michel F. Sanner (HICSS, 2003)

Computer-linked autofabricated 3D models for teaching structural biology. - Alexandre Gillet; Suzanne Weghorst; William Winn; Daniel Stoffler; Michel F. Sanner; David S. Goodsell; Arthur J. Olson (SIGGRAPH Sketches, 2004)

Augmented Reality with Tangible Auto-Fabricated Models for Molecular Biology Applications. - Alexandre Gillet; Michel F. Sanner; Daniel Stoffler; David S. Goodsell; Arthur J. Olson (IEEE Visualization, 2004)

Tangible Augmented Interfaces for Structural Molecular Biology. - Alexandre Gillet; Michel F. Sanner; Daniel Stoffler; Arthur J. Olson (IEEE Computer Graphics and Applications, 2005)

Building Cyberinfrastructure for Bioinformatics Using Service Oriented Architecture. - Wilfred W. Li; Sriram Krishnan; Kurt Mueller; Kohei Ichikawa; Susumu Date; Sargis Dallakyan; Michel F. Sanner; Chris Misleh; Zhaohui Ding; Xiaohui Wei 002; Osamu Tatebe; Peter W. Arzberger (CCGRID, 2006)

Hierarchical and multi-resolution representation of protein flexibility. - Yong Zhao; Daniel Stoffler; Michel F. Sanner (Bioinform., 2006)

Services Oriented Architecture for Managing Workflows of Avian Flu Grid. - Luca Clementi; Sriram Krishnan; Wesley Goodman; Jingyuan Ren; Wilfred W. Li; Peter W. Arzberger; Guillaume Vareille; Sargis Dallakyan; Michel F. Sanner (eScience, 2008)

Protein-ligand docking with multiple flexible side chains. - Yong Zhao; Michel F. Sanner (J. Comput. Aided Mol. Des., 2008)

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. - Garrett M. Morris; Ruth Huey; William Lindstrom; Michel F. Sanner; Richard K. Belew; David S. Goodsell; Arthur J. Olson (J. Comput. Chem., 2009)

uPy: A Ubiquitous CG Python API with Biological-Modeling Applications. - Ludovic Autin; Graham Johnson; Johan Hake; Arthur J. Olson; Michel F. Sanner (IEEE Computer Graphics and Applications, 2012)

AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility. - Pradeep Anand Ravindranath; Stefano Forli; David S. Goodsell; Arthur J. Olson; Michel F. Sanner (PLoS Comput. Biol., 2015)

AutoSite: an automated approach for pseudo-ligands prediction - from ligand-binding sites identification to predicting key ligand atoms. - Pradeep Anand Ravindranath; Michel F. Sanner (Bioinform., 2016)

AutoDock CrankPep: combining folding and docking to predict protein-peptide complexes. - Yuqi Zhang 003; Michel F. Sanner (Bioinform., 2019)

AutoGridFR: Improvements on AutoDock Affinity Maps and Associated Software Tools. - Yuqi Zhang 003; Stefano Forli; Anna Omelchenko; Michel F. Sanner (J. Comput. Chem., 2019)

Mesoscope: A Web-based Tool for Mesoscale Data Integration and Curation. - Ludovic Autin; Martina Maritan; Brett A. Barbaro; Adam Gardner; Arthur J. Olson; Michel F. Sanner; David S. Goodsell (MolVa@Eurographics/EuroVis, 2020)

Improving Docking Power for Short Peptides Using Random Forest. - Michel F. Sanner; Leonard Dieguez; Stefano Forli; Ewa Lis (J. Chem. Inf. Model., 2021)

Cyclic Peptides as Protein Kinase Inhibitors: Structure-Activity Relationship and Molecular Modeling. - Michel F. Sanner; Khalid Zoghebi; Samara Hanna; Saghar Mozaffari; Simin Rahighi; Rakesh K. Tiwari; Keykavous Parang (J. Chem. Inf. Model., 2021)

Predicting Protein-Peptide Interactions: Benchmarking Deep Learning Techniques and a Comparison with Focused Docking. - Sudhanshu Shanker; Michel F. Sanner (J. Chem. Inf. Model., 2023)