Towards a computational model for -1 eukaryotic frameshifting sites. - Michaël Bekaert; Laure Bidou; Alain Denise; Guillemette Duchateau-Nguyen; Jean-Paul Forest; Christine Froidevaux; Isabelle Hatin; Jean-Pierre Rousset; Michel Termier (Bioinform., 2003)

A Pairwise Alignment Algorithm Which Favors Clusters of Blocks. - Elodie Nédélec; Thomas Moncion; Elisabeth Gassiat; Bruno Bossard; Guillemette Duchateau-Nguyen; Alain Denise; Michel Termier (J. Comput. Biol., 2005)

GenRGenS: software for generating random genomic sequences and structures. - Yann Ponty; Michel Termier; Alain Denise (Bioinform., 2006)

Controlled non-uniform random generation of decomposable structures. - Alain Denise; Yann Ponty; Michel Termier (Theor. Comput. Sci., 2010)

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. - Julien Allali; Cédric Saule; Cédric Chauve; Yves D'Aubenton-Carafa; Alain Denise; Christine Drevet; Pascal Ferraro; Daniel Gautheret; Claire Herrbach; Fabrice Leclerc; Antoine de Monte; Aïda Ouangraoua; et al. (Adv. Bioinformatics, 2012)