Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes. - Michele Caselle; Ferdinando Di Cunto; Paolo Provero (BMC Bioinform., 2002)

Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs. - Davide Corà; Ferdinando Di Cunto; Paolo Provero; Lorenzo Silengo; Michele Caselle (BMC Bioinform., 2004)

Ab initio identification of putative human transcription factor binding sites by comparative genomics. - Davide Corà; Carl Herrmann; Christoph Dieterich; Ferdinando Di Cunto; Paolo Provero; Michele Caselle (BMC Bioinform., 2005)

Correlated fragile site expression allows the identification of candidate fragile genes involved in immunity and associated with carcinogenesis. - Angela Re; Davide Corà; Alda Maria Puliti; Michele Caselle; Isabella Sbrana (BMC Bioinform., 2006)

Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions. - Davide Corà; Ferdinando Di Cunto; Michele Caselle; Paolo Provero (BMC Bioinform., 2007)

Graph theory analysis of genomics problems: Community analysis of fragile sites correlations and of pseudogenes alignments. - Angela Re; Ivan Molineris; Michele Caselle (Comput. Math. Appl., 2008)

VRG: A database of vascular dysfunctions related genes. - Sara Zanivan; Davide Corà; Michele Caselle; Federico Bussolino (Comput. Math. Appl., 2008)

Ordered structure of the transcription network inherited from the yeast whole-genome duplication. - Diana Fusco; Luigi Grassi; Bruno Bassetti; Michele Caselle; Marco Cosentino Lagomarsino (BMC Syst. Biol., 2010)

A New Approach for the Identification of Processed Pseudogenes. - Ivan Molineris; Gabriele Sales; Federico Bianchi 007; Ferdinando Di Cunto; Michele Caselle (J. Comput. Biol., 2010)

The Role of Incoherent MicroRNA-Mediated Feedforward Loops in Noise Buffering. - Matteo Osella; Carla Bosia; Davide Corà; Michele Caselle (PLoS Comput. Biol., 2011)

High-speed camera with embedded FPGA processing. - Uros Stevanovic; Michele Caselle; Suren Chilingaryan; A. Herth; Andreas Kopmann; Matthias Vogelgesang; M. Balzer; M. Weber (DASIP, 2012)

Gene autoregulation via intronic microRNAs and its functions. - Carla Bosia; Matteo Osella; Mariama El Baroudi; Davide Corà; Michele Caselle (BMC Syst. Biol., 2012)

Dynamic Modeling of miRNA-mediated Feed-Forward Loops. - Federica Eduati; Barbara Di Camillo; Michael Karbiener; Marcel Scheideler; Davide Corà; Michele Caselle; Gianna Toffolo (J. Comput. Biol., 2012)

A Combination of Transcriptional and MicroRNA Regulation Improves the Stability of the Relative Concentrations of Target Genes. - Andrea Riba; Carla Bosia; Mariama El Baroudi; Laura Ollino; Michele Caselle (PLoS Comput. Biol., 2014)

A novel FPGA-based track reconstruction approach for the level-1 trigger of the CMS experiment at CERN. - Robin Aggleton; Luis E. Ardila-Perez; Fionn Amhairghen Ball; Matthias Norbert Balzer; James John Brooke; Luigi Calligaris; Michele Caselle; Davide Cieri; Emyr John Clement; Geoffrey Hall; Kristian Harder; Peter R. Hobson; et al. (FPL, 2017)

BITS2018: the fifteenth annual meeting of the Italian Society of Bioinformatics. - Francesca Cordero; Raffaele A. Calogero; Michele Caselle (BMC Bioinform., 2019)

The impact of whole genome duplications on the human gene regulatory networks. - Francesco Mottes; Chiara Villa; Matteo Osella; Michele Caselle (PLoS Comput. Biol., 2021)

Stochastic normalizing flows as non-equilibrium transformations. - Michele Caselle; Elia Cellini; Alessandro Nada; Marco Panero (CoRR, 2022)

Sampling the lattice Nambu-Goto string using Continuous Normalizing Flows. - Michele Caselle; Elia Cellini; Alessandro Nada (CoRR, 2023)

Numerical determination of the width and shape of the effective string using Stochastic Normalizing Flows. - Michele Caselle; Elia Cellini; Alessandro Nada (CoRR, 2024)

Stochastic normalizing flows for Effective String Theory. - Michele Caselle; Elia Cellini; Alessandro Nada (CoRR, 2024)