The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome. - Vinícius G. Contessoto; Ryan R. Cheng; Arya Hajitaheri; Esteban Dodero-Rojas; Matheus F. Mello; Erez Lieberman Aiden; Peter G. Wolynes; Michele Di Pierro; José N. Onuchic (Nucleic Acids Res., 2021)

An associative memory Hamiltonian model for DNA and nucleosomes. - Weiqi Lu; José N. Onuchic; Michele Di Pierro (PLoS Comput. Biol., 2023)