Signaling pathways coupling phenomena. - Michele Donato; Sorin Draghici (IJCNN, 2010)

The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways. - Luca Beltrame; Enrica Calura; Razvan R. Popovici; Lisa Rizzetto; Damariz Rivero Guedez; Michele Donato; Chiara Romualdi; Sorin Draghici; Duccio Cavalieri (Bioinform., 2011)

Incorporating Gene Significance in the Impact Analysis of Signaling Pathways. - Calin Voichita; Michele Donato; Sorin Draghici (ICMLA (1), 2012)

A method for analysis and correction of cross-talk effects in pathway analysis. - Michele Donato; Sorin Draghici; Alin Tomoiaga; Peter Westfall; Zhonghui Xu; Roberto Romero (IJCNN, 2012)

A genetic algorithms framework for estimating individual gene contributions in signaling pathways. - Calin Voichita; Michele Donato; Sorin Draghici (IEEE Congress on Evolutionary Computation, 2013)

Assessing co-regulation of directly linked genes in biological networks using microarray time series analysis. - Maria Rosaria Del Sorbo; Walter Balzano; Michele Donato; Sorin Draghici (Biosyst., 2013)

A systems biology approach for the identification of significantly perturbed genes. - Adib Shafi; Michele Donato; Sorin Draghici (BCB, 2015)

A novel bi-level meta-analysis approach: applied to biological pathway analysis. - Tin Chi Nguyen; Rebecca Tagett; Michele Donato; Cristina Mitrea; Sorin Draghici (Bioinform., 2016)

MicroRNA-Augmented Pathways (mirAP) and Their Applications to Pathway Analysis and Disease Subtyping. - Diana Diaz; Michele Donato; Tin Nguyen 001; Sorin Draghici (PSB, 2017)

An approach to infer putative disease-specific mechanisms using neighboring gene networks. - Sahar Ansari; Michele Donato; Nafiseh Saberian; Sorin Draghici (Bioinform., 2017)

A Novel Pathway Analysis Approach Based on the Unexplained Disregulation of Genes. - Sahar Ansari; Calin Voichita; Michele Donato; Rebecca Tagett; Sorin Draghici (Proc. IEEE, 2017)

A novel computational approach for drug repurposing using systems biology. - Azam Peyvandi-Pour; Nafiseh Saberian; Adib Shafi; Michele Donato; Sorin Draghici (Bioinform., 2018)

A new computational drug repurposing method using established disease-drug pair knowledge. - Nafiseh Saberian; Azam Peyvandi-Pour; Michele Donato; Sahar Ansari; Sorin Draghici (Bioinform., 2019)