QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering. - Matteo Comin; Andrea Leoni; Michele Schimd (WABI, 2014)

Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns. - Matteo Comin; Michele Schimd (BMC Bioinform., 2014)

Clustering of reads with alignment-free measures and quality values. - Matteo Comin; Andrea Leoni; Michele Schimd (Algorithms Mol. Biol., 2015)

Assembly-Free Techniques for NGS Data. - Matteo Comin; Michele Schimd (Algorithms for Next-Generation Sequencing Data, 2017)

Bounds and Estimates on the Average Edit Distance. - Michele Schimd; Gianfranco Bilardi (SPIRE, 2019)