ProtNet: a tool for stochastic simulations of protein interaction networks dynamics. - Massimo Bernaschi; Filippo Castiglione; Alessandra Ferranti; Caius Gavrila; Michele Tinti; Gianni Cesareni (BMC Bioinform., 2007)

VirusMINT: a viral protein interaction database. - Andrew Chatr-aryamontri; Arnaud Céol; Daniele Peluso; Aurelio Nardozza; Simona Panni; Francesca Sacco; Michele Tinti; Alex Smolyar; Luisa Castagnoli; Marc Vidal; Michael E. Cusick; Gianni Cesareni (Nucleic Acids Res., 2009)

ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome. - Michele Tinti; Fábio Madeira; Gavuthami Murugesan; Gerta Hoxhaj; Rachel Toth; Carol MacKintosh (Database J. Biol. Databases Curation, 2014)

14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides. - Fábio Madeira; Michele Tinti; Gavuthami Murugesan; Emily Berrett; Margaret Stafford; Rachel Toth; Christian Cole; Carol MacKintosh; Geoffrey J. Barton (Bioinform., 2015)

Predictive models of RNA degradation through dual crowdsourcing. - Hannah K. Wayment-Steele; Wipapat Kladwang; Andrew M. Watkins; Do Soon Kim; Bojan Tunguz; Walter Reade; Maggie Demkin; Jonathan Romano; Roger Wellington-Oguri; John J. Nicol; Jiayang Gao; Kazuki Onodera; et al. (CoRR, 2021)

Deep learning models for predicting RNA degradation via dual crowdsourcing. - Hannah K. Wayment-Steele; Wipapat Kladwang; Andrew M. Watkins; Do Soon Kim; Bojan Tunguz; Walter Reade; Maggie Demkin; Jonathan Romano; Roger Wellington-Oguri; John J. Nicol; Jiayang Gao; Kazuki Onodera; et al. (Nat. Mac. Intell., 2022)