TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. - Jeremy D. Selengut; Daniel H. Haft; Tanja Davidsen; Anurhada Ganapathy; Michelle Gwinn-Giglio; William C. Nelson; Alexander R. Richter; Owen White (Nucleic Acids Res., 2007)

iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology. - Zhang-Zhi Hu; K. Bretonnel Cohen; Lynette Hirschman; Alfonso Valencia; Hongfang Liu; Michelle G. Giglio; Cathy H. Wu (BIBM, 2008)

The Ontology of Microbial Phenotypes (OMP): A Precomposed Ontology Based on Cross Products from Multiple External Ontologies that is Used for Guiding Microbial Phenotype Annotation. - Marcus C. Chibucos; Adrienne E. Zweifel; Deborah A. Siegele; Peter Uetz; Michelle G. Giglio; James C. Hu (ICBO, 2011)

BioCreative III interactive task: an overview. - Cecilia N. Arighi; Phoebe M. Roberts; Shashank Agarwal; Sanmitra Bhattacharya; Gianni Cesareni; Andrew Chatr-aryamontri; Simon Clematide; Pascale Gaudet; Michelle G. Giglio; Ian Harrow; Eva Huala; Martin Krallinger; et al. (BMC Bioinform., 2011)

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. - Pascale Gaudet; Cecilia N. Arighi; Frederic B. Bastian; Alex Bateman; Judith A. Blake; J. Michael Cherry; Peter D'Eustachio; Robert D. Finn; Michelle G. Giglio; Lynette Hirschman; Renate Kania; William Klimke; et al. (Database J. Biol. Databases Curation, 2012)

Standardized description of scientific evidence using the Evidence Ontology (ECO). - Marcus C. Chibucos; Christopher J. Mungall; Rama Balakrishnan; Karen R. Christie; Rachael P. Huntley; Owen White; Judith A. Blake; Suzanna E. Lewis; Michelle G. Giglio (Database J. Biol. Databases Curation, 2014)

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations. - Frederic B. Bastian; Marcus C. Chibucos; Pascale Gaudet; Michelle G. Giglio; Gemma L. Holliday; Hong Huang; Suzanna E. Lewis; Anne Niknejad; Sandra E. Orchard; Sylvain Poux; Nives Skunca; Marc Robinson-Rechavi (Database J. Biol. Databases Curation, 2015)

Supporting Database Annotations and Beyond with the Evidence & Conclusion Ontology (ECO). - Marcus C. Chibucos; Suvarna Nadendla; James B. Munro; Elvira Mitraka; Dustin Olley; Nicole A. Vasilevsky; Matthew H. Brush; Michelle G. Giglio (ICBO/BioCreative, 2016)

Current Development in the Evidence and Conclusion Ontology (ECO). - Rebecca Tauber; James B. Munro; Suvarna Nadendla; Binika Chunara; Marcus C. Chibucos; Michelle G. Giglio (ICBO, 2018)

Phenotype annotation with the ontology of microbial phenotypes (OMP). - Deborah A. Siegele; Sandra A. LaBonte; Peter I-Fan Wu; Marcus C. Chibucos; Suvarna Nandendla; Michelle G. Giglio; James C. Hu (J. Biomed. Semant., 2019)

ECO, the Evidence & Conclusion Ontology: community standard for evidence information. - Michelle G. Giglio; Rebecca Tauber; Suvarna Nadendla; James B. Munro; Dustin Olley; Shoshannah Ball; Elvira Mitraka; Lynn M. Schriml; Pascale Gaudet; Elizabeth T. Hobbs; Ivan Erill; Deborah A. Siegele; et al. (Nucleic Acids Res., 2019)

Human Disease Ontology 2018 update: classification, content and workflow expansion. - Lynn M. Schriml; Elvira Mitraka; James B. Munro; Becky Tauber; Mike Schor; Lance Nickle; Victor Felix; Linda Jeng; Cynthia Bearer; Richard Lichenstein; Katharine Bisordi; Nicole Campion; et al. (Nucleic Acids Res., 2019)

Corpora as Evolving Entities: Embedding Corpora in Biomedical Ontologies. - Elizabeth T. Hobbs; Stephen M. Goralski; Ashley Mitchell; Andrew Simpson 007; Dorjan Leka; Emmanuel Kotey; Matt Sekira; James B. Munro; Suvarna Nadendla; Rebecca Jackson; Aitor Gonzalez-Agirre; Martin Krallinger; et al. (ICBO/ODLS, 2020)

Standardization of assay representation in the Ontology for Biomedical Investigations. - Randi Vita; Jie Zheng 001; Rebecca C. Jackson; Damion M. Dooley; James A. Overton; Mark A. Miller; Daniel C. Berrios; Richard H. Scheuermann; Yongqun He; Hande Küçük-McGinty; Mathias Brochhausen; Aisyah Yu Lin; et al. (Database J. Biol. Databases Curation, 2021)

ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts. - Elizabeth T. Hobbs; Stephen M. Goralski; Ashley Mitchell; Andrew Simpson 007; Dorjan Leka; Emmanuel Kotey; Matt Sekira; James B. Munro; Suvarna Nadendla; Rebecca Jackson; Aitor Gonzalez-Agirre; Martin Krallinger; et al. (Frontiers Res. Metrics Anal., 2021)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

HMPDACC: a Human Microbiome Project Multi-omic data resource. - Heather Huot Creasy; Victor Felix; Jain Aluvathingal; Jonathan Crabtree; Olukemi O. Ifeonu; James Matsumura; Carrie McCracken; Lance Nickel; Joshua Orvis; Mike Schor; Michelle G. Giglio; Anup Mahurkar; et al. (Nucleic Acids Res., 2021)

Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem. - Michelle G. Giglio; Suvarna Nadendla; Arthur Brady; Amanda Charbonneau; Karl Czajkowski; Jeremy Yang; Tom Gillespie; Philippe Rocca-Serra; Jeffrey S. Grethe; Raja Mazumder; Bernard de Bono; Jonathan C. Silverstein; et al. (ICBO, 2022)

ECO: the Evidence and Conclusion Ontology, an update for 2022. - Suvarna Nadendla; Rebecca C. Jackson; James B. Munro; Federica Quaglia; Bálint Mészáros; Dustin Olley; Elizabeth T. Hobbs; Stephen M. Goralski; Marcus C. Chibucos; Christopher J. Mungall; Silvio C. E. Tosatto; Ivan Erill; et al. (Nucleic Acids Res., 2022)

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. - Federica Quaglia; Bálint Mészáros; Edoardo Salladini; András Hatos; Rita Pancsa; Lucía B. Chemes; Mátyás Pajkos; Tamas Lazar; Samuel Peña-Díaz; Jaime Santos; Veronika Ács; Nazanin Farahi; et al. (Nucleic Acids Res., 2022)

The Human Disease Ontology 2022 update. - Lynn M. Schriml; James B. Munro; Mike Schor; Dustin Olley; Carrie McCracken; Victor Felix; J. Allen Baron; Rebecca C. Jackson; Susan M. Bello; Cynthia Bearer; Richard Lichenstein; Katharine Bisordi; et al. (Nucleic Acids Res., 2022)

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain. - Seth A. Ament; Ricky S. Adkins; Robert Carter; Elena Chrysostomou; Carlo Colantuoni; Jonathan Crabtree; Heather Huot Creasy; Kylee Degatano; Victor Felix; Peter Gandt; Gwenn a Garden; Michelle G. Giglio; et al. (Nucleic Acids Res., 2023)