The Hera database and its use in the characterization of endoplasmic reticulum proteins. - Michelle S. Scott; Guoqing Lu; Michael T. Hallett; David Y. Thomas (Bioinform., 2004)

Refining Protein Subcellular Localization. - Michelle S. Scott; Sara J. Calafell; David Y. Thomas; Michael T. Hallett (PLoS Comput. Biol., 2005)

Probabilistic prediction and ranking of human protein-protein interactions. - Michelle S. Scott; Geoffrey J. Barton (BMC Bioinform., 2007)

Prediction and ranking of human protein-protein interactions within a Bayesian framework. - Michelle S. Scott; Geoffrey J. Barton (BMC Syst. Biol., 2007)

PIPs: human protein-protein interaction prediction database. - Mark D. McDowall; Michelle S. Scott; Geoffrey J. Barton (Nucleic Acids Res., 2009)

Human miRNA Precursors with Box H/ACA snoRNA Features. - Michelle S. Scott; Fabio Avolio; Motoharu Ono; Angus I. Lamond; Geoffrey J. Barton (PLoS Comput. Biol., 2009)

Human protein-protein interaction prediction. - Mark D. McDowall; Michelle S. Scott; Geoffrey J. Barton (BMC Bioinform., 2010)

NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins. - Michelle S. Scott; Peter V. Troshin; Geoffrey J. Barton (BMC Bioinform., 2011)

G4RNA: an RNA G-quadruplex database. - Jean-Michel Garant; Mikael J. Luce; Michelle S. Scott; Jean-Pierre Perreault (Database J. Biol. Databases Curation, 2015)

Aligning coding sequences with frameshift extension penalties. - Safa Jammali; Esaie Kuitche; Ayoub Rachati; François Bélanger; Michelle S. Scott; Aïda Ouangraoua (Algorithms Mol. Biol., 2017)

Motif independent identification of potential RNA G-quadruplexes by G4RNA screener. - Jean-Michel Garant; Jean-Pierre Perreault; Michelle S. Scott (Bioinform., 2017)

CoCo: RNA-seq read assignment correction for nested genes and multimapped reads. - Gabrielle Deschamps-Francoeur; Vincent Boivin; Sherif Abou Elela; Michelle S. Scott (Bioinform., 2019)

OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes. - Marie A. Brunet; Mylène Brunelle; Jean-François Lucier; Vivian Delcourt; Maxime Levesque; Frédéric Grenier; Sondos Samandi; Sébastien Leblanc; Jean-David Aguilar; Pascal Dufour; Jean-Francois Jacques; Isabelle Fournier; et al. (Nucleic Acids Res., 2019)

snoDB: an interactive database of human snoRNA sequences, abundance and interactions. - Philia Bouchard-Bourelle; Clément Desjardins-Henri; Darren Mathurin-St-Pierre; Gabrielle Deschamps-Francoeur; Étienne Fafard-Couture; Jean-Michel Garant; Sherif Abou Elela; Michelle S. Scott (Nucleic Acids Res., 2020)

Current RNA-seq methodology reporting limits reproducibility. - Joël Simoneau; Simon Dumontier; Ryan Gosselin; Michelle S. Scott (Briefings Bioinform., 2021)

OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes. - Marie A. Brunet; Jean-François Lucier; Maxime Levesque; Sébastien Leblanc; Jean-Francois Jacques; Hassan R. H. Al-Saedi; Noé Guilloy; Frédéric Grenier; Mariano Avino; Isabelle Fournier; Michel Salzet; Aïda Ouangraoua; et al. (Nucleic Acids Res., 2021)

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. - Blake A. Sweeney; Anton I. Petrov; Carlos Eduardo Ribas; Robert D. Finn; Alex Bateman; Maciej Szymanski; Wojciech M. Karlowski; Stefan E. Seemann; Jan Gorodkin; Jamie J. Cannone; Robin Ray Gutell; Simon Kay; et al. (Nucleic Acids Res., 2021)

SAPFIR: A webserver for the identification of alternative protein features. - Delong Zhou; Yvan Tran; Sherif Abou Elela; Michelle S. Scott (BMC Bioinform., 2022)

snoDB 2.0: an enhanced interactive database, specializing in human snoRNAs. - Danny Bergeron; Hermes Paraqindes; Étienne Fafard-Couture; Gabrielle Deschamps-Francoeur; Laurence Faucher-Giguère; Philia Bouchard-Bourelle; Sherif Abou Elela; Frédéric Catez; Virginie Marcel; Michelle S. Scott (Nucleic Acids Res., 2023)

Newfound Coding Potential of Transcripts Unveils Missing Members of Human Protein Communities. - Sébastien Leblanc; Marie A. Brunet; Jean-Francois Jacques; Amina M. Lekehal; Andréa Duclos; Alexia Tremblay; Alexis Bruggeman-Gascon; Sondos Samandi; Mylène Brunelle; Alan A. Cohen; Michelle S. Scott; Xavier Roucou (Genom. Proteom. Bioinform., 2023)