FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA. - Michiel Van Bel; Yvan Saeys; Yves Van de Peer (Bioinform., 2008)

A Parallel, Distributed-Memory Framework for Comparative Motif Discovery. - Dieter De Witte; Michiel Van Bel; Pieter Audenaert; Piet Demeester; Bart Dhoedt; Klaas Vandepoele; Jan Fostier (PPAM (2), 2013)

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements. - Dieter De Witte; Jan Van de Velde; Dries Decap; Michiel Van Bel; Pieter Audenaert; Piet Demeester; Bart Dhoedt; Klaas Vandepoele; Jan Fostier (Bioinform., 2015)

PLAZA 3.0: an access point for plant comparative genomics. - Sebastian Proost; Michiel Van Bel; Dries Vaneechoutte; Yves Van de Peer; Dirk Inzé; Bernd Mueller-Roeber; Klaas Vandepoele (Nucleic Acids Res., 2015)

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization. - Lukasz Kreft; Alexander Botzki; Frederik Coppens; Klaas Vandepoele; Michiel Van Bel (Bioinform., 2017)

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. - Michiel Van Bel; Tim Diels; Emmelien Vancaester; Lukasz Kreft; Alexander Botzki; Yves Van de Peer; Frederik Coppens; Klaas Vandepoele (Nucleic Acids Res., 2018)

Comment on 'Hayai-Annotation Plants: an ultrafast and comprehensive functional gene annotation system in plants': the importance of taking the GO graph structure into account. - Michiel Van Bel; Klaas Vandepoele (Bioinform., 2021)

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. - Michiel Van Bel; Francesca Silvestri; Eric M. Weitz; Lukasz Kreft; Alexander Botzki; Frederik Coppens; Klaas Vandepoele (Nucleic Acids Res., 2022)