From genomics to chemical genomics: new developments in KEGG. - Minoru Kanehisa; Susumu Goto; Masahiro Hattori; Kiyoko F. Aoki-Kinoshita; Masumi Itoh; Shuichi Kawashima; Toshiaki Katayama; Michihiro Araki; Mika Hirakawa (Nucleic Acids Res., 2006)

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. - Yoshihiro Yamanishi; Michihiro Araki; Alex Gutteridge; Wataru Honda; Minoru Kanehisa (ISMB, 2008)

KEGG for linking genomes to life and the environment. - Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi (Nucleic Acids Res., 2008)

Extraction and Analysis of Chemical Modification Patterns in Drug Development. - Daichi Shigemizu; Michihiro Araki; Shujiro Okuda; Susumu Goto; Minoru Kanehisa (J. Chem. Inf. Model., 2009)

An approach for dynamical network reconstruction of simple network motifs. - Masahiko Nakatsui; Michihiro Araki; Akihiko Kondo (BMC Syst. Biol., 2013)

M-path: a compass for navigating potential metabolic pathways. - Michihiro Araki; Robert Sidney Cox III; Hiroki Makiguchi; Teppei Ogawa; Takeshi Taniguchi; Kohei Miyaoku; Masahiko Nakatsui; Kiyotaka Y. Hara; Akihiko Kondo (Bioinform., 2015)

Exploration and Evaluation of Machine Learning-Based Models for Predicting Enzymatic Reactions. - Naoki Watanabe 005; Masahiro Murata; Teppei Ogawa; Christopher J. Vavricka; Akihiko Kondo; Chiaki Ogino; Michihiro Araki (J. Chem. Inf. Model., 2020)

Toward the Construction of a Knowledge Graph from Japanese Food Ontology for the Prevention of Frailty. - Chihiro Higuchi; Agustin Martin-Morales; Ai Oya; Mai Inoue; Misako Ikkai; Kenji Mizuguchi; Michihiro Araki (IJCKG (Workshop/Poster/Demo), 2023)

Extracting the latent needs of dementia patients and caregivers from transcribed interviews in japanese: an initial assessment of the availability of morpheme selection as input data with Z-scores in machine learning. - Nanae Tanemura; Tsuyoshi Sasaki; Ryotaro Miyamoto; Jin Watanabe; Michihiro Araki; Junko Sato; Tsuyoshi Chiba (BMC Medical Informatics Decis. Mak., 2023)

Large language models and questions from older adults: a human and machine-based evaluation study. - Research Dawadi; Thien Vu; Jie Ting Tay; Phap Ngoc Hoang Tran; Ai Oya; Masaki Yamamoto 011; Naoki Watanabe; Yuki Kuriya; Michihiro Araki (Discov. Artif. Intell., 2025)

Prediction of depressive disorder using machine learning approaches: findings from the NHANES. - Thien Vu; Research Dawadi; Masaki Yamamoto 011; Jie Ting Tay; Naoki Watanabe; Yuki Kuriya; Ai Oya; Phap Ngoc Hoang Tran; Michihiro Araki (BMC Medical Informatics Decis. Mak., 2025)