An Evolving Automaton for RNA Secondary Structure Prediction. - Carlos A. M. Del Carpio; Mohamed Ismael; Eiichiro Ichiishi; Michihisa Koyama; Momoji Kubo; Akira Miyamoto (IJCNN, 2006)

A Flexibility Index for Analysis of Bio-molecular Complexes. - Carlos A. M. Del Carpio; Eiichiro Ichiishi; Michihisa Koyama; Momoji Kubo; Akira Miyamoto (IJCNN, 2006)

Molecular dynamics study on the ligand recognition by tandem SH3 domains of p47phox, regulating NADPH oxidase activity. - Yoko Watanabe; Hideyuki Tsuboi; Michihisa Koyama; Momoji Kubo; Carlos Adriel Del Carpio; Ewa Broclawik; Eiichiro Ichiishi; Masahiro Kohno; Akira Miyamoto (Comput. Biol. Chem., 2006)

The effect of R249S carcinogenic and H168R-R249S suppressor mutations on p53-DNA interaction, a multi scale computational study. - Shah Md. Abdur Rauf; Mohamed Ismael; Kamlesh Kumar Sahu; Ai Suzuki; Michihisa Koyama; Hideyuki Tsuboi; Nozomu Hatakeyama; Akira Endou; Hiromitsu Takaba; Carlos Adriel Del Carpio; Momoji Kubo; Akira Miyamoto (Comput. Biol. Medicine, 2010)

Molecular dynamics of liquid-electrode interface by integrating Coulomb interaction into universal neural network potential. - Kaoru Hisama; Gerardo Valadez Huerta; Michihisa Koyama (J. Comput. Chem., 2024)

Physical Significance of Descriptors to Predict the Band Center of High-Entropy Nanoalloys. - Yusuke Nanba; Michihisa Koyama (J. Comput. Chem., 2025)