IA, database of known ligands of aminoacyl-tRNA synthetases. - Mieczyslaw Torchala; Marcin Hoffmann (J. Comput. Aided Mol. Des., 2007)

SwarmDock: a server for flexible protein-protein docking. - Mieczyslaw Torchala; Iain H. Moal; Raphael A. G. Chaleil; Juan Fernández-Recio; Paul A. Bates (Bioinform., 2013)

The scoring of poses in protein-protein docking: current capabilities and future directions. - Iain H. Moal; Mieczyslaw Torchala; Paul A. Bates; Juan Fernández-Recio (BMC Bioinform., 2013)

RaTrav: a tool for calculating mean first-passage times on biochemical networks. - Mieczyslaw Torchala; Przemyslaw Chelminiak; Michal Kurzynski; Paul A. Bates (BMC Syst. Biol., 2013)

Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization. - Rudi Agius; Mieczyslaw Torchala; Iain H. Moal; Juan Fernández-Recio; Paul A. Bates (PLoS Comput. Biol., 2013)

IRaPPA: information retrieval based integration of biophysical models for protein assembly selection. - Iain H. Moal; Didier Barradas-Bautista; Brian Jiménez-García; Mieczyslaw Torchala; Arjan van der Velde; Thom Vreven; Zhiping Weng; Paul A. Bates; Juan Fernández-Recio (Bioinform., 2017)