PARCE: Protocol for Amino acid Refinement through Computational Evolution. - Rodrigo Ochoa; Miguel A. Soler; Alessandro Laio; Pilar Cossio (Comput. Phys. Commun., 2021)

Replica-exchange optimization of antibody fragments. - Miguel A. Soler; Nikola Minovski; Walter Rocchia; Sara Fortuna (Comput. Biol. Chem., 2023)

Molecular electrostatics and pKa shifts calculations with the Generalized Born model. A tutorial through examples with Bluues2. - Miguel A. Soler; Ozge Ozkilinc; Yamanappa Hunashal; Paolo Giannozzi; Gennaro Esposito; Federico Fogolari (Comput. Phys. Commun., 2023)