A Parallel Solution of Hermitian Toeplitz Linear Systems, . - Pedro Alonso 002; Miguel Oscar Bernabeu; Antonio M. Vidal (International Conference on Computational Science (1), 2006)

Parallel Implementation in PC Clusters of a Lanczos-based Algorithm for an Electromagnetic Eigenvalue Problem. - Miguel Oscar Bernabeu; Mariam Taroncher; Víctor M. García 001; Ana Vidal (ISPDC, 2006)

An Adaptive Interface for the Efficient Computation of the Discrete Sine Transform. - Pedro Alonso 002; Miguel Oscar Bernabeu; Antonio-Manuel Vidal-Maciá (PPAM, 2007)

Robust Parallel Implementation of a Lanczos-based Algorithm for an Structured Electromagnetic Eigenvalue Problem. - Miguel O. Bernabeu; Mariam Taroncher; Víctor M. García 001; Ana Vidal (Scalable Comput. Pract. Exp., 2007)

Parallel computation of the eigenvalues of symmetric Toeplitz matrices through iterative methods. - Antonio M. Vidal; Víctor M. García 001; Pedro Alonso 002; Miguel Oscar Bernabeu (J. Parallel Distributed Comput., 2008)

A multilevel parallel algorithm to solve symmetric Toeplitz linear systems. - Miguel Oscar Bernabeu; Pedro Alonso 002; Antonio M. Vidal (J. Supercomput., 2008)

Chaste: A test-driven approach to software development for biological modelling. - Joe Pitt-Francis; Pras Pathmanathan; Miguel O. Bernabeu; Rafel Bordas; Jonathan Cooper; Alexander G. Fletcher; Gary R. Mirams; Philip J. Murray; James M. Osborne; Alex Walter; S. Jonathan Chapman; Alan Garny; et al. (Comput. Phys. Commun., 2009)

Simulating cardiac electrophysiology using anisotropic mesh adaptivity. - James Southern; Gerard J. Gorman; M. D. Piggott; Patrick E. Farrell; Miguel O. Bernabeu; Joe Pitt-Francis (J. Comput. Sci., 2010)

Anisotropic mesh adaptivity for cardiac electrophysiology. - James Southern; Gerard J. Gorman; M. D. Piggott; Patrick E. Farrell; Miguel O. Bernabeu; Joe Pitt-Francis (ICCS, 2010)

Stimulus Protocol Determines the Most Computationally Efficient Preconditioner for the Bidomain Equations. - Miguel O. Bernabeu; Pras Pathmanathan; Joe Pitt-Francis; David Kay (IEEE Trans. Biomed. Eng., 2010)

Simulating Drug-Induced Effects on the Heart: From Ion Channel to Body Surface Electrocardiogram. - Nejib Zemzemi; Miguel O. Bernabeu; Javier Saiz; Blanca Rodríguez (FIMH, 2011)

Implementation and tuning of a parallel symmetric Toeplitz eigensolver. - Pedro Alonso 002; Miguel Oscar Bernabeu; Víctor M. García 001; Antonio M. Vidal (J. Parallel Distributed Comput., 2011)

Scalable parallel preconditioners for an open source cardiac electrophysiology simulation package. - Miguel O. Bernabeu; David Kay (ICCS, 2011)

Analyzing and Modeling the Performance of the HemeLB Lattice-Boltzmann Simulation Environment - Derek Groen; James Hetherington; Hywel B. Carver; Rupert W. Nash; Miguel O. Bernabeu; Peter V. Coveney (CoRR, 2012)

Coalesced communication: a design pattern for complex parallel scientific software - Hywel B. Carver; Derek Groen; James Hetherington; Rupert W. Nash; Miguel O. Bernabeu; Peter V. Coveney (CoRR, 2012)

Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations - Derek Groen; Joris Borgdorff; Carles Bona-Casas; James Hetherington; Rupert W. Nash; Stefan J. Zasada; Ilya Saverchenko; Mariusz Mamonski; Krzysztof Kurowski; Miguel O. Bernabeu; Alfons G. Hoekstra; Peter V. Coveney (CoRR, 2012)

Choice of blood rheology model has minor impact on computational assessment of shear stress mediated vascular risk - Miguel O. Bernabeu; Rupert W. Nash; Derek Groen; Hywel B. Carver; James Hetherington; Timm Krüger; Peter V. Coveney (CoRR, 2012)

Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis. - Miguel O. Bernabeu; Claudio A. Franco; Martin Jones; Jens H. Nielsen; Timm Krüger; Rupert W. Nash; Derek Groen; James Hetherington; Holger Gerhardt; Peter V. Coveney (CoRR, 2013)

Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment. - Derek Groen; James Hetherington; Hywel B. Carver; Rupert W. Nash; Miguel O. Bernabeu; Peter V. Coveney (J. Comput. Sci., 2013)

Chaste: An Open Source C++ Library for Computational Physiology and Biology. - Gary R. Mirams; Christopher J. Arthurs; Miguel O. Bernabeu; Rafel Bordas; Jonathan Cooper; Alberto Corrias; Yohan Davit; Sara-Jane Dunn; Alexander G. Fletcher; Daniel G. Harvey; Megan E. Marsh; James M. Osborne; et al. (PLoS Comput. Biol., 2013)

Weighted Decomposition in High-Performance Lattice-Boltzmann Simulations: Are Some Lattice Sites More Equal than Others? - Derek Groen; David Abou Chacra; Rupert W. Nash; Jirí Jaros; Miguel O. Bernabeu; Peter V. Coveney (EASC, 2014)

Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. - Miguel O. Bernabeu; James Southern; Nicholas Wilson; Peter E. Strazdins; Jonathan Cooper; Joe Pitt-Francis (Int. J. High Perform. Comput. Appl., 2014)

Ten Simple Rules for Effective Computational Research. - James M. Osborne; Miguel O. Bernabeu; Maria Bruna; Ben Calderhead; Jonathan Cooper; Neil Dalchau; Sara-Jane Dunn; Alexander G. Fletcher; Robin Freeman; Derek Groen; Bernhard Knapp; Greg J. McInerny; et al. (PLoS Comput. Biol., 2014)

Characterization of parafoveal hemodynamics associated with diabetic retinopathy with adaptive optics scanning laser ophthalmoscopy and computational fluid dynamics. - Miguel O. Bernabeu; Yang Lu; Jan Lammer; Lloyd Paul Aiello; Peter V. Coveney; Jennifer K. Sun (EMBC, 2015)

An automated multiscale ensemble simulation approach for vascular blood flow. - Mohamed A. Itani; Ulf D. Schiller; Sebastian Schmieschek; James Hetherington; Miguel O. Bernabeu; Hoskote Chandrashekar; Fergus Robertson; Peter V. Coveney; Derek Groen (J. Comput. Sci., 2015)

Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. - Bernhard Knapp; Rémi Bardenet; Miguel O. Bernabeu; Rafel Bordas; Maria Bruna; Ben Calderhead; Jonathan Cooper; Alexander G. Fletcher; Derek Groen; Bram Kuijper; Joanna Lewis; Greg J. McInerny; et al. (PLoS Comput. Biol., 2015)

A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling. - James M. Osborne; Miguel O. Bernabeu (EMBC, 2018)

Automated and Network Structure Preserving Segmentation of Optical Coherence Tomography Angiograms. - Ylenia Giarratano; Eleonora Bianchi; Calum D. Gray; Andrew Morris; Tom J. MacGillivray; Baljean Dhillon; Miguel O. Bernabeu (CoRR, 2019)

DR Detection Using Optical Coherence Tomography Angiography (OCTA): A Transfer Learning Approach with Robustness Analysis. - Rayna Andreeva; Alessandro Fontanella; Ylenia Giarratano; Miguel O. Bernabeu (OMIA@MICCAI, 2020)

A Framework for the Discovery of Retinal Biomarkers in Optical Coherence Tomography Angiography (OCTA). - Ylenia Giarratano; Alisa Pavel; Jie Lian; Rayna Andreeva; Alessandro Fontanella; Rik Sarkar; Laura J. Reid; Shareen Forbes; Dan Pugh; Tariq E. Farrah; Neeraj Dhaun; Baljean Dhillon; et al. (OMIA@MICCAI, 2020)

Chaste: Cancer, Heart and Soft Tissue Environment. - Fergus R. Cooper; Ruth E. Baker; Miguel O. Bernabeu; Rafel Bordas; Louise Bowler; Alfonso Bueno-Orovio; Helen M. Byrne; Valentina Carapella; Louie Cardone-Noott; Jonathan Cooper; Sara Dutta; Benjamin D. Evans; et al. (J. Open Source Softw., 2020)

Reproducibility of Retinal Vascular Phenotypes Obtained with Optical Coherence Tomography Angiography: Importance of Vessel Segmentation. - Darwon Rashid; Sophie Cai; Ylenia Giarratano; Calum D. Gray; Charlene Hamid; Dilraj S. Grewal; Tom J. MacGillivray; Sharon Fekrat; Cason B. Robbins; Srinath Soundararajan; Justin P. Ma; Miguel O. Bernabeu (MIUA, 2021)

Euler Characteristic Surfaces. - Gabriele Beltramo; Rayna Andreeva; Ylenia Giarratano; Miguel O. Bernabeu; Rik Sarkar; Primoz Skraba (CoRR, 2021)

Global explainability in aligned image modalities. - Justin Engelmann; Amos J. Storkey; Miguel O. Bernabeu (CoRR, 2021)

On the preservation of vessel bifurcations during flow-mediated angiogenic remodelling. - Lowell T. Edgar; Claudio A. Franco; Holger Gerhardt; Miguel O. Bernabeu (PLoS Comput. Biol., 2021)

Robust and Efficient Computation of Retinal Fractal Dimension Through Deep Approximation. - Justin Engelmann; Ana Villaplana-Velasco; Amos J. Storkey; Miguel O. Bernabeu (OMIA@MICCAI, 2022)

Analysing Optical Coherence Tomography Angiography of Mid-Life Persons at Risk of Developing Alzheimer's Disease Later in Life. - Darwon Rashid; Ylenia Giarratano; Charlene Hamid; Thomas J. MacGillivray; Graciela Terrera Muniz; Craig Ritchie; Baljean Dhillon; Miguel O. Bernabeu (OMIA@MICCAI, 2022)

Rethinking Retinal Image Quality: Treating Quality Threshold as a Tunable Hyperparameter. - Fabian S. L. Yii; Raman Dutt; Thomas J. MacGillivray; Baljean Dhillon; Miguel O. Bernabeu; Niall C. Strang (OMIA@MICCAI, 2022)

Detection of multiple retinal diseases in ultra-widefield fundus images using deep learning: data-driven identification of relevant regions. - Justin Engelmann; Alice D. McTrusty; Ian J. C. MacCormick; Emma Pead; Amos J. Storkey; Miguel O. Bernabeu (CoRR, 2022)

Detecting multiple retinal diseases in ultra-widefield fundus imaging and data-driven identification of informative regions with deep learning. - Justin Engelmann; Alice D. McTrusty; Ian J. C. MacCormick; Emma Pead; Amos J. Storkey; Miguel O. Bernabeu (Nat. Mac. Intell., 2022)

QuickQual: Lightweight, Convenient Retinal Image Quality Scoring with Off-the-Shelf Pretrained Models. - Justin Engelmann; Amos J. Storkey; Miguel O. Bernabeu (OMIA@MICCAI, 2023)

Associations Between Retinal Microvasculature Changes and Gray Matter Volume in a Mid-Life Cohort at Risk of Developing Alzheimer's Disease. - Darwon Rashid; Ylenia Giarratano; Charlene Hamid; Thomas J. MacGillivray; Graciela Terrera Muniz; Craig Ritchie; Baljean Dhillon; Megan Reid-Schachter; Audrey Low; Maria-Eleni Dounavi; John T. O'Brien; Miguel O. Bernabeu (OMIA@MICCAI, 2023)

Data Efficiency of Segment Anything Model for Optic Disc and Cup Segmentation. - Fabian S. L. Yii; Thomas J. MacGillivray; Miguel O. Bernabeu (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

Segmentation of White Matter Hyperintensities and Ischaemic Stroke Lesions in Structural MRI. - Jesse Phitidis; Alison Q. O'Neil; Stewart Wiseman; David Alexander Dickie; Eleni Sakka; Agniete Kampaite; William Whiteley; Miguel O. Bernabeu; Beatrice Alex; Joanna M. Wardlaw; Maria del C. Valdés Hernández (MIUA, 2023)

Efficient and fully-automatic retinal choroid segmentation in OCT through DL-based distillation of a hand-crafted pipeline. - Jamie Burke; Justin Engelmann; Charlene Hamid; Megan Reid-Schachter; Tom Pearson; Dan Pugh; Neeraj Dhaun; Stuart King; Tom J. MacGillivray; Miguel O. Bernabeu; Amos J. Storkey; Ian J. C. MacCormick (CoRR, 2023)

Choroidalyzer: An open-source, end-to-end pipeline for choroidal analysis in optical coherence tomography. - Justin Engelmann; Jamie Burke; Charlene Hamid; Megan Reid-Schachter; Dan Pugh; Neeraj Dhaun; Diana Moukaddem; Lyle Gray; Niall C. Strang; Paul McGraw; Amos J. Storkey; Paul J. Steptoe; et al. (CoRR, 2023)

Mathematical models of developmental vascular remodelling: A review. - Jessica R. Crawshaw; Jennifer A. Flegg; Miguel O. Bernabeu; James M. Osborne (PLoS Comput. Biol., 2023)

Early experiences of integrating an artificial intelligence-based diagnostic decision support system into radiology settings: a qualitative study. - Nusa Faric; Sue Hinder; Robin Williams 001; Rishi Ramaesh; Miguel O. Bernabeu; Edwin van Beek; Kathrin M. Cresswell (J. Am. Medical Informatics Assoc., 2023)

Comparison of Classical and Deep Learning-Based Feature Representations for Age-Related Macular Degeneration. - Parsa Sinichi; Miguel O. Bernabeu; Malihe Javidi (MICAD, 2024)

Stochastic Uncertainty Quantification Techniques Fail to Account for Inter-analyst Variability in White Matter Hyperintensity Segmentation. - Ben Philps; Maria del C. Valdés Hernández; Susana Muñoz Maniega; Mark E. Bastin; Eleni Sakka; Una Clancy; Joanna M. Wardlaw; Miguel O. Bernabeu (MIUA (1), 2024)

Applicability of oculomics for individual risk prediction: Repeatability and robustness of retinal Fractal Dimension using DART and AutoMorph. - Justin Engelmann; Diana Moukaddem; Lucas Gago; Niall C. Strang; Miguel O. Bernabeu (CoRR, 2024)

Training a high-performance retinal foundation model with half-the-data and 400 times less compute. - Justin Engelmann; Miguel O. Bernabeu (CoRR, 2024)

Domain-specific augmentations with resolution agnostic self-attention mechanism improves choroid segmentation in optical coherence tomography images. - Jamie Burke; Justin Engelmann; Charlene Hamid; Diana Moukaddem; Dan Pugh; Neeraj Dhaun; Amos J. Storkey; Niall C. Strang; Stuart King; Tom J. MacGillivray; Miguel O. Bernabeu; Ian J. C. MacCormick (CoRR, 2024)

Uncertainty quantification for White Matter Hyperintensity segmentation detects silent failures and improves automated Fazekas quantification. - Ben Philps; Maria del C. Valdés Hernández; Chen Qin; Una Clancy; Eleni Sakka; Susana Muñoz Maniega; Mark E. Bastin; Angela C. C. Jochems; Joanna M. Wardlaw; Miguel O. Bernabeu; Alzheimer's Disease Neuroimaging Initiative (CoRR, 2024)

Robust Windowing Harmonisation for Improved Cross-Scanner Generalisation of White Matter Hypoattenuation Segmentation in Brain CT Clinical Scans. - Nada Alamoudi; Maria del C. Valdés Hernández; Sohan Seth; Joanna M. Wardlaw; Miguel O. Bernabeu (AIiH (2), 2025)

Automated neuroradiological support systems for multiple cerebrovascular disease markers - A systematic review and meta-analysis. - Jesse Phitidis; Alison Q. O'Neil; William Whiteley; Beatrice Alex; Joanna M. Wardlaw; Miguel O. Bernabeu; Maria del C. Valdés Hernández (Comput. Methods Programs Biomed., 2025)

SpinDoctor-IVIM: A virtual imaging framework for intravoxel incoherent motion MRI. - Mojtaba Lashgari; Zheyi Yang; Miguel O. Bernabeu; Jing-Rebecca Li; Alejandro F. Frangi (Medical Image Anal., 2025)

Uncertainty quantification for White Matter Hyperintensity segmentation detects silent failures and improves automated Fazekas quantification. - Ben Philps; Maria del C. Valdés Hernández; Chen Qin; Una Clancy; Eleni Sakka; Susana Muñoz Maniega; Mark E. Bastin; Angela C. C. Jochems; Joanna M. Wardlaw; Miguel O. Bernabeu (Medical Image Anal., 2025)

A mixed methods formative evaluation of the United Kingdom National Health Service Artificial Intelligence Lab. - Kathrin M. Cresswell; Robin Williams 001; Sheena Dungey; Stuart Anderson; Miguel O. Bernabeu; Hajar Mozaffar; Xiao Yang; Varun Sai; Sara Bea; Sally Eason (npj Digit. Medicine, 2025)