Qxpak: a versatile mixed model application for genetical genomics and QTL analyses. - Miguel Pérez-Enciso; Ignacy Misztal (Bioinform., 2004)

Multiple association analysis via simulated annealing (MASSA). - Miguel Pérez-Enciso (Bioinform., 2006)

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data. - Antonio Reverter; Nicholas J. Hudson 001; Shivashankar H. Nagaraj; Miguel Pérez-Enciso; Brian P. Dalrymple (Bioinform., 2010)

Explaining the Genetic Basis of Complex Quantitative Traits through Prediction Models. - Oscar Luaces; José Ramón Quevedo; Miguel Pérez-Enciso; Jorge Díez 001; Juan José del Coz; Antonio Bahamonde (J. Comput. Biol., 2010)

Qxpak.5: Old mixed model solutions for new genomics problems. - Miguel Pérez-Enciso; Ignacy Misztal (BMC Bioinform., 2011)

SNP calling by sequencing pooled samples. - Emanuele Raineri; Luca Ferretti; Anna Esteve-Codina; Bruno Nevado; Simon Heath; Miguel Pérez-Enciso (BMC Bioinform., 2012)

Disease Liability Prediction from Large Scale Genotyping Data Using Classifiers with a Reject Option. - José Ramón Quevedo; Antonio Bahamonde; Miguel Pérez-Enciso; Oscar Luaces (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

HIV Drug Resistance Prediction with Categorical Kernel Functions. - Elies Ramon; Miguel Pérez-Enciso; Lluís A. Belanche Muñoz (IWBBIO (2), 2019)

HIV drug resistance prediction with weighted categorical kernel functions. - Elies Ramon; Lluís A. Belanche Muñoz; Miguel Pérez-Enciso (BMC Bioinform., 2019)