Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach. - Gabriel Núñez-Vivanco; Alejandro Valdés-Jiménez; Felipe Besoain; Miguel Reyes-Parada (J. Cheminformatics, 2016)

Improving the Discovery and Clustering of Three-Dimensional Protein Patterns with OpenMP. - Alejandro Valdés-Jiménez; Miguel Reyes-Parada; Gabriel Núñez-Vivanco; Fabio Durán-Verdugo; Daniel Jiménez-González (SBAC-PAD, 2023)

Parallel Algorithm for Discovering and Comparing Three-Dimensional Proteins Patterns. - Alejandro Valdés-Jiménez; Miguel Reyes-Parada; Gabriel Núñez-Vivanco; Daniel Jiménez-González (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)