The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. - Martin Krallinger; Miguel Vazquez; Florian Leitner; David Salgado; Andrew Chatr-aryamontri; Andrew G. Winter; Livia Perfetto; Leonardo Briganti; Luana Licata; Marta Iannuccelli; Luisa Castagnoli; Gianni Cesareni; et al. (BMC Bioinform., 2011)

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience. - Martin Krallinger; Florian Leitner; Miguel Vazquez; David Salgado; Christophe Marcelle; Mike Tyers; Alfonso Valencia; Andrew Chatr-aryamontri (Database J. Biol. Databases Curation, 2012)

Chapter 14: Cancer Genome Analysis. - Miguel Vazquez; Victor de la Torre; Alfonso Valencia (PLoS Comput. Biol., 2012)

wKinMut: An integrated tool for the analysis and interpretation of mutations in human protein kinases. - José M. G. Izarzugaza; Miguel Vazquez; Angela del Pozo; Alfonso Valencia (BMC Bioinform., 2013)

CheNER: chemical named entity recognizer. - Anabel Usie; Rui Alves; Francesc Solsona; Miguel Vazquez; Alfonso Valencia (Bioinform., 2014)

Structure-PPi: a module for the annotation of cancer-related single-nucleotide variants at protein-protein interfaces. - Miguel Vazquez; Alfonso Valencia; Tirso Pons (Bioinform., 2015)

CHEMDNER: The drugs and chemical names extraction challenge. - Martin Krallinger; Florian Leitner; Obdulia Rabal; Miguel Vazquez; Julen Oyarzabal; Alfonso Valencia (J. Cheminformatics, 2015)

The CHEMDNER corpus of chemicals and drugs and its annotation principles. - Martin Krallinger; Obdulia Rabal; Florian Leitner; Miguel Vazquez; David Salgado; Zhiyong Lu; Robert Leaman; Yanan Lu; Donghong Ji; Daniel M. Lowe; Roger A. Sayle; Riza Theresa Batista-Navarro; et al. (J. Cheminformatics, 2015)

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge. - Martín Pérez-Pérez; Gael Pérez Rodríguez; Obdulia Rabal; Miguel Vazquez; Julen Oyarzabal; Florentino Fdez-Riverola; Alfonso Valencia; Martin Krallinger; Anália Lourenço (Database J. Biol. Databases Curation, 2016)

CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets. - Åsmund Flobak; Miguel Vazquez; Astrid Lægreid; Alfonso Valencia (Bioinform., 2017)

Rate Splitting for MIMO Multibeam Satellite Systems. - Miguel Vazquez; Màrius Caus; Ana I. Pérez-Neira (WSA, 2018)

Patient Dossier: Healthcare queries over distributed resources. - Miguel Vazquez; Alfonso Valencia (PLoS Comput. Biol., 2019)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)