SMASHing regulatory sites in DNA by human. - Mihaela Zavolan; Nicholas D. Socci; Nikolaus Rajewsky; Terry Gaasterland (CSB, 2003)

Identification of clustered microRNAs using an ab initio prediction method. - Alain Sewer; Nicodème Paul; Pablo Landgraf; Alexei Aravin; Sébastien Pfeffer; Michael J. Brownstein; Thomas Tuschl; Erik van Nimwegen; Mihaela Zavolan (BMC Bioinform., 2005)

Inference of miRNA targets using evolutionary conservation and pathway analysis. - Dimos Gaidatzis; Erik van Nimwegen; Jean Hausser; Mihaela Zavolan (BMC Bioinform., 2007)

Correction: Inference of miRNA targets using evolutionary conservation and pathway analysis. - Dimos Gaidatzis; Erik van Nimwegen; Jean Hausser; Mihaela Zavolan (BMC Bioinform., 2007)

MirZ: an integrated microRNA expression atlas and target prediction resource. - Jean Hausser; Philipp Berninger; Christoph Rodak; Yvonne Jantscher; Stefan Wirth; Mihaela Zavolan (Nucleic Acids Res., 2009)

CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins. - Mohsen Khorshid; Christoph Rodak; Mihaela Zavolan (Nucleic Acids Res., 2011)

Deciphering the regulatory functions of miRNAs. - Mihaela Zavolan (CMSR@ECCB, 2014)

TSSer: an automated method to identify transcription start sites in prokaryotic genomes from differential RNA sequencing data. - Hadi Jorjani; Mihaela Zavolan (Bioinform., 2014)

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. - Heinz Stockinger; Adrian M. Altenhoff; Konstantin Arnold; Amos Bairoch; Frederic B. Bastian; Sven Bergmann; Lydie Bougueleret; Philipp Bucher; Mauro Delorenzi; Lydie Lane; Philippe Le Mercier; Frédérique Lisacek; et al. (Nucleic Acids Res., 2014)

Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors. - Saeed Omidi; Mihaela Zavolan; Mikhail Pachkov; Jeremie Breda; Severin Berger; Erik van Nimwegen (PLoS Comput. Biol., 2017)

PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3? end sequencing. - Christina J. Herrmann; Ralf Schmidt; Alexander Kanitz; Panu Artimo; Andreas J. Gruber; Mihaela Zavolan (Nucleic Acids Res., 2020)